Fig. 2: StratoMod found context-specific regions where variants are likely to be missed in either HiFi or Illumina analysis pipelines.
From: StratoMod: predicting sequencing and variant calling errors with interpretable machine learning
a Experimental overview b IGV images depicting false negative calls identified by this model. c–f EBM interaction feature plots for SNV hard-to-map regions (c), SNV LINEs and segmental duplications (d), INDEL hard-to-map regions (e), and INDEL tandem repeats/indel length (f). LINE long interspersed nuclear element. Error bars and ribbons around step plots are model errors.
