Fig. 4: Ablation results. | Communications Biology

Fig. 4: Ablation results.

From: Improved enzyme functional annotation prediction using contrastive learning with structural inference

Fig. 4

We conducted a comparative analysis of several model variations, including our proposed CLEAN-Contact (ESM2+Contact), CLEAN-Contact without structure representation (ESM2), CLEAN-Contact with ESM-1b instead of ESM-2 (ESM1b+Contact), the original CLEAN (ESM1b), and a model with solely structure representation devoid of ESM-2 or ESM-1b generated sequence representation (Contact). a, Evaluation of predictive performance metrics (Precision, Recall, F-1 score, and AUROC) across different models on the New-392 test dataset. b, Evaluation of predictive performance metrics (Precision, Recall, F-1 score, and AUROC) across different models on the Price-149 test dataset.

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