Table 1 Key resource table referring to individual key resources used in this study

From: Endothelial tip-cell position, filopodia formation and biomechanics require BMPR2 expression and signaling

Key resource table

Reagent type or resource

Designation

Source or reference

Identifiers

Additional information

Primary cells and Cell lines

 Human EAhy926

BMPR2wt; WT ECs; WT

48

 

See supporting information48 Figure S1 and corresponding Materials and Methods for further information

 Human EAhy926 BMPR2 KO1

BMPR2+/-; BMPR2 deficient ECs; ECs with BMPR2 deficiency

48

 

Haploinsufficiency model for BMPR2, created by CRISPR/Cas9 in Hiepen et al. Plos Biol. 2019; see supporting information48 Figure S1 and corresponding Materials and Methods for further information

 Human umbilical vein endothelial cells (female)

HUVEC

113

 

Single donor cells were sex-specifically genotyped prior to application in this work

 African green monkey kidney fibroblasts (SV40 T antigen)

COS7

ATCC

CRL-1651

 

Animal models

 Tg(kdrl:EGFP) s843

Tg(kdrl:EGFP)

104

ZFIN:ZDB-ALT-050916-14

 

Transfected constructs

 pcDNA3.1 BMPR2-HA- LF

BMPR2-HA

48

 

Long form of BMPR2 amino- terminally tagged with HA

 pcDNA3.1 BMPR2-HA- SF

BMPR2-HA-SF

48

 

Short form of BMPR2 amino- terminally tagged with HA

 pcDNA3.1 BMPR2-MYC-K230R

BMPR2-K230R-Myc

   

 pcDNA3.1 ALK1-meGFP

ALK1-GFP

   

 pcDNA3.1 ALK2-meGFP

ALK2-GFP

   

 pcDNA3.1 ALK3-meGFP

ALK3-GFP

   

 pcDNA3.1 Endoglin-meGFP

Endoglin -GFP

   

 BMPR2 c-term myc

BMPR2-myc

48

 

The coding sequence of human BMPR2 was C-terminally myc-tagged and subcloned into pcDNA3.1 from HA-BMPR2-LF plasmid

 BMPR2- n-term EGFP

BMPR2-GFP

this paper

 

Monomeric enhanced GFP cloned after signal peptide. Gly5 linker between megfp and mature LF BMPRII sequence.

 pRK5 meGFP

GFP

 

Addgene #18696

 

 CDC42-Q61L-eGFP

C.A. CDC42-GFP

114

 

Activating mutation at position 61

 pTriEx4-Cdc42-2G

CDC42- biosensor; CDC42 activity sensor; CDC42 2 G activity sensor

115

Addgene #68814

Second generation CDC42 activity sensor based on original sensor design from Klaus Hahn lab but with modified domain orientation and permutated fluorescent proteins for better dynamic range

 Lifeact-TagGFP2

LifeAct-GFP

Ibidi USA; Fisher scientific

#50-114-9044

 

 CMVdel-dimericTomato-WASp(CRIB)

Active endogenous CDC42 biosensor

89

Addgene #191450

 

Oligonucleotides used in this study

Morpholinos used

bmpr2b E2 MO

5ʹAGCTGCCGACACACAAAATGAGAAA-3ʹ

GENE Tools

  

 gRNA exon 1

5ʹ- TGAGAGTGCGGATCCTAAAC – 3ʹ

Integrated DNA Technologies

  

 gRNA exon 3

5ʹ-GCGTTGTGGTAACCACGCAA -3ʹ

Integrated DNA Technologies

  

siRNA Oligos

 Accell siRNA SMARTPOOL targeting BMPR2

siBMPR2

Dharmacon

E-005309-00-0010

 

 Accell FITC-labeled non-targeting siRNA

si-FITC

Dharmacon

D-001950-01-20

 

 Accell ONTARGETplus non-targeting siRNA

siscr

Dharmacon

D-001920-01-50

 

 Accell siRNA delivery media

 

Dharmacon

B-005000

 

ZF-Bmpr2b_E2_rev1

5ʹ-CACGATAGCCAAAGAACAGCG-3ʹ

   

ZF-b-actin_fwd

5ʹ-TGTTTTCCCCTCCATTGTTGG-3ʹ

   

 ZF-b-actin_rev

5ʹ-TTCTCCTTGATGTCACGGAC-3ʹ

   

 ZF-bmpr2b-Exon1_fwd

5ʹ-ATGAGCTTGAACTTCGGTCGAT-3ʹ

   

 ZF-bmpr2b-Exon1_rev

5ʹ- GACACCCTTTAAGACATTGCAGG-3ʹ

   

 ZF-bmpr2b-Exon3_fwd

5ʹ- GTATCTCAGTGTTTCACTCCACC-3ʹ

   

 ZF-bmpr2b-Exon3_rev

5ʹ- ATGACATCACAACATGCTGATACA-3ʹ

   

Antibodies used

 anti-phospho SMAD1/5 (Ser463/465) (41D10)

 

Cell Signaling Technology

#9516

Dilution WB: 1:1000

 Anti-Smad1 XP

 

Cell Signaling Technology

#6944

Dilution WB: 1:1000

 anti-phospho-AKT (Ser473)

 

Cell Signaling Technology

#9271

Dilution WB: 1:1000

 anti-phospho-AKT (Thr308)

 

Cell Signaling Technology

#9275

Dilution WB: 1:1000

 anti-AKT

 

Cell Signaling Technology

#9272

Dilution WB: 1:1000

 anti-phospho MLC2 (Thr18/Ser19)

 

Cell Signaling Technology

#3674

Dilution WB: 1:1000

 anti-GAPDH

 

Cell Signaling Technology

#14C10

Dilution WB: 1:1000

 anti-Myc

 

Cell Signaling Technology

#9B11

Dilution IF: 1:10.000

Dilution

PLA: 1:5000

 anti-GFP

 

Cell Signaling Technology

#2956

Dilution PLA: 1:500; IF: 1:750

 anti-HA (HA-7)

 

Sigma-Aldrich

 

Dilution SPTM: 1 µg/ml;

IF: 1:1000

 anti- vinculin

 

Sigma-Aldrich

#V9131

Dilution

IF: 1:400

 anti- Beta-Catenin

 

BD Bioscience

#610153

Dilution IF: 1:200

 anti-BMPR2

 

BD Bioscience

#612292

Dilution

WB: 1:1000

 anti-CDC42

 

Abcam

#155940

Dilution IF: 1:750

 anti-CD34

 

Abcam

#81289

 

 Anti-Mouse Alexa Fluor 488 (goat)

 

Thermofisher Scientifics

A10684

 

 Anti-Mouse Alexa Fluor 594 (goat)

 

Thermofisher Scientifics

A11020

 

 Anti-Rabbit Alexa Fluor 488 (chicken)

 

Thermofisher Scientifics

A21441

 

 Anti-Rabbit Alexa Fluor 594 (goat)

 

Thermofisher Scientifics

A11072

 

 Goat anti rabbit 2ndary HRP-linked antibody

 

Dianova

111-035-144

Pan BMP-Smad inhibition

 Goat anti mouse 2ndary HRP-linked antibody

 

Dianova

115-035-068

Pan PI3K inhibition

Critical commercial assays

   

Rho Kinase inhibition

 Proximity Ligation Assay (PLA) DUOLINK kit

 

Sigma-Aldrich

#DUO92101

 

Dyes (conjugated)

 DAPI

 

Sigma-Aldrich

D954

 

 Phalloidin CruzFluor 594 conjugate

 

Santa Cruz Bio

sc-363795

 

 Phalloidin CruzFluor 647 Conjugate

 

SantaCruz

Sc-363797

 

 Vybrant™ DiI Cell Labeling Solution

 

Thermo- Fisher Scientific

V22885

Vybrant™ DiI Cell Labeling Solution

 Vybrant™ DiO Cell Labeling Solution

 

Thermo- Fisher Scientific

V22886

Vybrant™ DiO Cell Labeling Solution

 Celltracker Red CMTPX Dye

 

Thermo- Fisher Scientific

C34552

 

 Celltracker Green CMFDA Dye

 

Thermo- Fisher Scientific

C2925

 

Small Molecule Inhibitors

 LDN-193189

LDN

Tocris Bioscience

# 6053

 

 LY294002

LY

Cell Signaling

# 9901

 

 UCL-TRO-1938

TRO1938

MCE

HY-154848

 

 Y-27632

Rocki, Rock inhibitor

Stemcell Technologies

# 72304

 

 CytochalasinD

CytoD

Thermofisher Scientifics

PHZ1063

 

Critical chemicals used in this study

 Dimethyl sulfoxide (DMSO)

 

Sigma-Aldrich

D2650

 

 Protease Inhibitor Cocktail

 

Sigma-Aldrich

P6148

 

 Paraformaldehyde 4% (PFA)

 

VWR

VWRK4186

 

Purified proteins and additives

 Thrombin

 

Sigma-Aldrich

T4648 1KU

 

 Fibrinogen type 1

 

Sigma-Aldrich

F8630

 

 Endothelial cell growth supplement (ECGS)

ECGS

Corning, NY

#356006

 

 Heparin

 

Merck

375095-100KU

 

 Fibronectin from bovine plasma

 

Sigma-Aldrich

F1141

 

 Normal goat serum

 

Sigma-Aldrich

NS02L

 

 Aprotinin

 

Sigma-Aldrich

A1153

 

 Recombinant hBMP6

BMP6

102

 

Human mature BMP-6 produced in Chinese hamster ovary cells

Other research tools

 Fluospheres Dark Red

 

Thermofisher Scientifics

F8807

 

 Quantum dot labeled F(ab’)2-Goat anti-Mouse IgG (H + L) Secondary Antibody, Qdot 655 nm

Qdot antibody

Thermo- Fisher Scientific

#Q-11021MP

Further information on QDot labeling and SPTM ca be found in Zelman-Femiak M and Harms GS et al.: Biotechniques 2010, Guzman A. And Knaus P. Et al. J Biol Chem. 2012

 96 well plate heating insert for life cell microscopy

 

PECON

M96 2000 EC

 

 Matrigel® Growth Factor Reduced (GFR) Basement Membrane Matrix

 

Corning

354230

 

 Cytodex 3 beads

 

GE Healthcare

GE17-0485-01

 

 Scratch wound assay- Culture-Insert 2 Well in µ-Dish 35 mm

 

Ibidi

#81176

 

 µ-Slide 8 Well Glass Bottom

 

Ibidi

#80827

 

Software and Algorithms

 Fiji imagej

 

111

  

 3D TFM analysis

TFMLAB

108

 

Code freely available at: https://gitlab.kuleuven.be/MAtrix/Jorge/tfmlab_public

 MATLAB

 

MathWorks

  

 Paraview

 

Kitware

  

 ZEN Blue

 

Carl Zeiss

  

 ZEN Black

 

Carl Zeiss

  

 Prism

 

Graphpad

  

 Biorender

 

Biorender.com