Table 1 Key resource table referring to individual key resources used in this study
Key resource table | ||||
---|---|---|---|---|
Reagent type or resource | Designation | Source or reference | Identifiers | Additional information |
Primary cells and Cell lines | ||||
Human EAhy926 | BMPR2wt; WT ECs; WT | See supporting information48 Figure S1 and corresponding Materials and Methods for further information | ||
Human EAhy926 BMPR2 KO1 | BMPR2+/-; BMPR2 deficient ECs; ECs with BMPR2 deficiency | Haploinsufficiency model for BMPR2, created by CRISPR/Cas9 in Hiepen et al. Plos Biol. 2019; see supporting information48 Figure S1 and corresponding Materials and Methods for further information | ||
Human umbilical vein endothelial cells (female) | HUVEC | Single donor cells were sex-specifically genotyped prior to application in this work | ||
African green monkey kidney fibroblasts (SV40 T antigen) | COS7 | ATCC | CRL-1651 | |
Animal models | ||||
Tg(kdrl:EGFP) s843 | Tg(kdrl:EGFP) | ZFIN:ZDB-ALT-050916-14 | ||
Transfected constructs | ||||
pcDNA3.1 BMPR2-HA- LF | BMPR2-HA | Long form of BMPR2 amino- terminally tagged with HA | ||
pcDNA3.1 BMPR2-HA- SF | BMPR2-HA-SF | Short form of BMPR2 amino- terminally tagged with HA | ||
pcDNA3.1 BMPR2-MYC-K230R | BMPR2-K230R-Myc | |||
pcDNA3.1 ALK1-meGFP | ALK1-GFP | |||
pcDNA3.1 ALK2-meGFP | ALK2-GFP | |||
pcDNA3.1 ALK3-meGFP | ALK3-GFP | |||
pcDNA3.1 Endoglin-meGFP | Endoglin -GFP | |||
BMPR2 c-term myc | BMPR2-myc | The coding sequence of human BMPR2 was C-terminally myc-tagged and subcloned into pcDNA3.1 from HA-BMPR2-LF plasmid | ||
BMPR2- n-term EGFP | BMPR2-GFP | this paper | Monomeric enhanced GFP cloned after signal peptide. Gly5 linker between megfp and mature LF BMPRII sequence. | |
pRK5 meGFP | GFP | Addgene #18696 | ||
CDC42-Q61L-eGFP | C.A. CDC42-GFP | Activating mutation at position 61 | ||
pTriEx4-Cdc42-2G | CDC42- biosensor; CDC42 activity sensor; CDC42 2 G activity sensor | Addgene #68814 | Second generation CDC42 activity sensor based on original sensor design from Klaus Hahn lab but with modified domain orientation and permutated fluorescent proteins for better dynamic range | |
Lifeact-TagGFP2 | LifeAct-GFP | Ibidi USA; Fisher scientific | #50-114-9044 | |
CMVdel-dimericTomato-WASp(CRIB) | Active endogenous CDC42 biosensor | Addgene #191450 | ||
Oligonucleotides used in this study | ||||
Morpholinos used | ||||
bmpr2b E2 MO | 5ʹAGCTGCCGACACACAAAATGAGAAA-3ʹ | GENE Tools | ||
gRNA exon 1 | 5ʹ- TGAGAGTGCGGATCCTAAAC – 3ʹ | Integrated DNA Technologies | ||
gRNA exon 3 | 5ʹ-GCGTTGTGGTAACCACGCAA -3ʹ | Integrated DNA Technologies | ||
siRNA Oligos | ||||
Accell siRNA SMARTPOOL targeting BMPR2 | siBMPR2 | Dharmacon | E-005309-00-0010 | |
Accell FITC-labeled non-targeting siRNA | si-FITC | Dharmacon | D-001950-01-20 | |
Accell ONTARGETplus non-targeting siRNA | siscr | Dharmacon | D-001920-01-50 | |
Accell siRNA delivery media | Dharmacon | B-005000 | ||
ZF-Bmpr2b_E2_rev1 | 5ʹ-CACGATAGCCAAAGAACAGCG-3ʹ | |||
ZF-b-actin_fwd | 5ʹ-TGTTTTCCCCTCCATTGTTGG-3ʹ | |||
ZF-b-actin_rev | 5ʹ-TTCTCCTTGATGTCACGGAC-3ʹ | |||
ZF-bmpr2b-Exon1_fwd | 5ʹ-ATGAGCTTGAACTTCGGTCGAT-3ʹ | |||
ZF-bmpr2b-Exon1_rev | 5ʹ- GACACCCTTTAAGACATTGCAGG-3ʹ | |||
ZF-bmpr2b-Exon3_fwd | 5ʹ- GTATCTCAGTGTTTCACTCCACC-3ʹ | |||
ZF-bmpr2b-Exon3_rev | 5ʹ- ATGACATCACAACATGCTGATACA-3ʹ | |||
Antibodies used | ||||
anti-phospho SMAD1/5 (Ser463/465) (41D10) | Cell Signaling Technology | #9516 | Dilution WB: 1:1000 | |
Anti-Smad1 XP | Cell Signaling Technology | #6944 | Dilution WB: 1:1000 | |
anti-phospho-AKT (Ser473) | Cell Signaling Technology | #9271 | Dilution WB: 1:1000 | |
anti-phospho-AKT (Thr308) | Cell Signaling Technology | #9275 | Dilution WB: 1:1000 | |
anti-AKT | Cell Signaling Technology | #9272 | Dilution WB: 1:1000 | |
anti-phospho MLC2 (Thr18/Ser19) | Cell Signaling Technology | #3674 | Dilution WB: 1:1000 | |
anti-GAPDH | Cell Signaling Technology | #14C10 | Dilution WB: 1:1000 | |
anti-Myc | Cell Signaling Technology | #9B11 | Dilution IF: 1:10.000 Dilution PLA: 1:5000 | |
anti-GFP | Cell Signaling Technology | #2956 | Dilution PLA: 1:500; IF: 1:750 | |
anti-HA (HA-7) | Sigma-Aldrich | Dilution SPTM: 1 µg/ml; IF: 1:1000 | ||
anti- vinculin | Sigma-Aldrich | #V9131 | Dilution IF: 1:400 | |
anti- Beta-Catenin | BD Bioscience | #610153 | Dilution IF: 1:200 | |
anti-BMPR2 | BD Bioscience | #612292 | Dilution WB: 1:1000 | |
anti-CDC42 | Abcam | #155940 | Dilution IF: 1:750 | |
anti-CD34 | Abcam | #81289 | ||
Anti-Mouse Alexa Fluor 488 (goat) | Thermofisher Scientifics | A10684 | ||
Anti-Mouse Alexa Fluor 594 (goat) | Thermofisher Scientifics | A11020 | ||
Anti-Rabbit Alexa Fluor 488 (chicken) | Thermofisher Scientifics | A21441 | ||
Anti-Rabbit Alexa Fluor 594 (goat) | Thermofisher Scientifics | A11072 | ||
Goat anti rabbit 2ndary HRP-linked antibody | Dianova | 111-035-144 | Pan BMP-Smad inhibition | |
Goat anti mouse 2ndary HRP-linked antibody | Dianova | 115-035-068 | Pan PI3K inhibition | |
Critical commercial assays | Rho Kinase inhibition | |||
Proximity Ligation Assay (PLA) DUOLINK kit | Sigma-Aldrich | #DUO92101 | ||
Dyes (conjugated) | ||||
DAPI | Sigma-Aldrich | D954 | ||
Phalloidin CruzFluor 594 conjugate | Santa Cruz Bio | sc-363795 | ||
Phalloidin CruzFluor 647 Conjugate | SantaCruz | Sc-363797 | ||
Vybrant™ DiI Cell Labeling Solution | Thermo- Fisher Scientific | V22885 | Vybrant™ DiI Cell Labeling Solution | |
Vybrant™ DiO Cell Labeling Solution | Thermo- Fisher Scientific | V22886 | Vybrant™ DiO Cell Labeling Solution | |
Celltracker Red CMTPX Dye | Thermo- Fisher Scientific | C34552 | ||
Celltracker Green CMFDA Dye | Thermo- Fisher Scientific | C2925 | ||
Small Molecule Inhibitors | ||||
LDN-193189 | LDN | Tocris Bioscience | # 6053 | |
LY294002 | LY | Cell Signaling | # 9901 | |
UCL-TRO-1938 | TRO1938 | MCE | HY-154848 | |
Y-27632 | Rocki, Rock inhibitor | Stemcell Technologies | # 72304 | |
CytochalasinD | CytoD | Thermofisher Scientifics | PHZ1063 | |
Critical chemicals used in this study | ||||
Dimethyl sulfoxide (DMSO) | Sigma-Aldrich | D2650 | ||
Protease Inhibitor Cocktail | Sigma-Aldrich | P6148 | ||
Paraformaldehyde 4% (PFA) | VWR | VWRK4186 | ||
Purified proteins and additives | ||||
Thrombin | Sigma-Aldrich | T4648 1KU | ||
Fibrinogen type 1 | Sigma-Aldrich | F8630 | ||
Endothelial cell growth supplement (ECGS) | ECGS | Corning, NY | #356006 | |
Heparin | Merck | 375095-100KU | ||
Fibronectin from bovine plasma | Sigma-Aldrich | F1141 | ||
Normal goat serum | Sigma-Aldrich | NS02L | ||
Aprotinin | Sigma-Aldrich | A1153 | ||
Recombinant hBMP6 | BMP6 | Human mature BMP-6 produced in Chinese hamster ovary cells | ||
Other research tools | ||||
Fluospheres Dark Red | Thermofisher Scientifics | F8807 | ||
Quantum dot labeled F(ab’)2-Goat anti-Mouse IgG (H + L) Secondary Antibody, Qdot 655 nm | Qdot antibody | Thermo- Fisher Scientific | #Q-11021MP | Further information on QDot labeling and SPTM ca be found in Zelman-Femiak M and Harms GS et al.: Biotechniques 2010, Guzman A. And Knaus P. Et al. J Biol Chem. 2012 |
96 well plate heating insert for life cell microscopy | PECON | M96 2000 EC | ||
Matrigel® Growth Factor Reduced (GFR) Basement Membrane Matrix | Corning | 354230 | ||
Cytodex 3 beads | GE Healthcare | GE17-0485-01 | ||
Scratch wound assay- Culture-Insert 2 Well in µ-Dish 35 mm | Ibidi | #81176 | ||
µ-Slide 8 Well Glass Bottom | Ibidi | #80827 | ||
Software and Algorithms | ||||
Fiji imagej | ||||
3D TFM analysis | TFMLAB | Code freely available at: https://gitlab.kuleuven.be/MAtrix/Jorge/tfmlab_public | ||
MATLAB | MathWorks | |||
Paraview | Kitware | |||
ZEN Blue | Carl Zeiss | |||
ZEN Black | Carl Zeiss | |||
Prism | Graphpad | |||
Biorender | Biorender.com |