Table 1 High-confidence Ψ sites identified by both Mut-Ψ-seq and PRAISE
From: Promoted read-through and mutation against pseudouridine-CMC by an evolved reverse transcriptase
Refseq | Name | Region | Sequence motif |
|---|---|---|---|
NM_020992.4:317 | PDZ and LIM domain 1 | CDS | CUUG |
NM_023934.4:234 | FUN14 domain containing 2 | CDS | CUUUUG** |
NM_000983.4:313 | Ribosomal protein L22 | CDS | GUG |
NM_014014.5:62 | Small nuclear ribonucleoprotein U5 subunit 200 | 5′UTR | CUUG |
NM_001253384.2:631 | Ribosomal protein L15 | CDS | GUA |
NM_000980.4:247 | Ribosomal protein L18a | CDS | GUG |
NM_018457.4:148 | Proline rich 13 | CDS | GUUC* |
NM_012423.4:456 | Ribosomal protein L13a | CDS | GUUG** |
NM_207346.3:305 | tRNA splicing endonuclease subunit 54 | CDS | GUUG* |
NM_213611.3:887 | Solute carrier family 25 member 3 | CDS | CUUUG** |
NM_052844.4:399 | Dynein 2 intermediate chain 2 | CDS | GUG |
NM_003302.3:1434 | Thyroid hormone receptor interactor 6 | CDS | CUG |
NM_033251.2:823 | Ribosomal protein L13 | CDS | CUUC** |
NM_002080.4:241 | Glutamic-oxaloacetic transaminase 2 | CDS | CUUUA |
NM_004077.3:672 | Citrate synthase | CDS | CUUUG |
NM_017952.6:495 | Pentatricopeptide repeat domain 3 | CDS | AUUG |
NM_001319140.2:639 | Adenylate kinase 2 | CDS | GUUC* |
NM_012111.3:465 | Activator of HSP90 ATPase activity 1 | CDS | CUUG |
NM_001199973.2:242 | RPL36A-HNRNPH2 readthrough | CDS | CUUG |
NM_015975.5:2436 | TATA-box binding protein associated factor 9b | 3′UTR | GUUC* |
NM_001142285.2:92 | Ribosomal protein S24 | CDS | CUUC** |
NM_006816.3:778 | Lectin, mannose binding 2 | CDS | CUUC** |
NM_001199629.2:594 | Myosin light chain 6B | CDS | CUUG** |
NM_019059.5:228 | Translocase of outer mitochondrial membrane 7 | 3′UTR | CUUUG** |
NM_000990.5:179 | Ribosomal protein L27a | CDS | CUUUG** |
NM_001679.4:293 | ATPase Na+/K+ transporting subunit beta 3 | CDS | GUUUUUUA** |
NM_003795.6:296 | Sorting nexin 3 | CDS | AUUUUC** |
NM_012268.4:1692 | Phospholipase D family member 3 | CDS | CUG |
NM_001199111.2:699 | Malate dehydrogenase 1 | CDS | CUUG** |
NM_053275.4:748 | Ribosomal protein lateral stalk subunit P0 | CDS | CUUG** |
NM_198552.3:779 | Family with sequence similarity 89 member A | 3′UTR | CUUUG |
NM_004450.3:648 | ERH mRNA splicing and mitosis factor | 3′UTR | GUUC* |
NM_001402.6:519 | Eukaryotic translation elongation factor 1 alpha 1 | CDS | GUUA |
NM_014394.3:166 | Growth hormone inducible transmembrane protein | CDS | CUA |
NR_104080.1:85 | U6 small nuclear 9 | – | AUUCG |
NR_001445.2:247 | 7SK nuclear ribonucleoprotein | – | AUUUG |
NR_001445.2:250 | 7SK nuclear ribonucleoprotein | – | GUA |
NR_104080.1:40 | U6 small nuclear 9 | – | AUA |
NR_002569.2:69 | Small Cajal body-specific RNA 9 | – | CUUUC** |
NR_003932.2:457 | Ribosomal protein L13a pseudogene 20 | – | GUUG |
