Table 1 P. australis genome assembly statistics
Contig | PaCui.No1 | Draft genome30 | LpPhrAust1.131 | CN (Chinese lineage)29 |
|---|---|---|---|---|
Total size (bp) | 874,619,212 | 1,139,927,050 | - | - |
Number of contigs | 312 | 13,411 | - | - |
Number of contigs ≥ 50,000 bp | 152 | 4617 | - | - |
Largest contig (bp) | 54,964,116 | 3,219,705 | - | - |
GC content (%) | 44.21 | 44.04 | - | - |
N50 length (bp) | 33,936,801 | 194,574 | - | - |
L50 count | 11 | 1370 | - | - |
BUSCO (%) | 99.3 | 93.3 | - | - |
Chromosomes | ||||
 Number of chromosomes+Unchr | 25 + 50 | - | 24 + 13 | 25 + 1288 |
 Total size (bp) | 852,113,342 | - | 849,281,002 | 920,401,352 |
 GC content (%) | 44.27 | - | 44.17 | 43.94 |
 N50 length (bp) | 34,052,747 | - | 35,123,032 | 34,219,654 |
 Gaps | 1 (Chr B) |  | 59 | 0 |
 L50 | 10 | - | 10 | 11 |
 BUSCO genome (%) | 99.3 | - | 98.9 | 98.9 |
 CEGMA (%) | 99.46 | - | - |  |
 LTR Assembly Index (LAI) | 11.54 | - | - | 12.71 |
 Second-generation Data Mapping | 98.62% | - | - | - |
 Third-generation Data Mapping | 99.99% | - | - | - |
Annotation | ||||
 Number of genes loci | 41,008 | 64,857 | 47,513 | 42,498 |
 BUSCO annotation (%) | 98.40 | - | - | 98.2 |
 Functional annotation (%) | 98.83 | - | - | - |
 Percentage of repeat sequences (%) | 65.62 | 56.19% | - | 63.95% |
 Percentage of TEs (%) | 64.98 | - | - | - |
 Number of predicted SSRs | 160,796 | - | - | - |
 Number of rRNAs | 1744 | - | - | 3749 |
 Number of tRNAs | 836 | - | - | 851 |
 Number of miRNAs | 229 | - | - | - |
 Number of snRNAs | 459 | - | - | - |
 Subgenome | Number of chromosomes | Length (bp) | Number of genes | LTR Assembly Index (LAI) |
 Subgenome A | 12 | 399249732 | 20290 | 12.24 |
 Subgenome B | 12 | 427051217 | 20425 | 12.47 |
 B Chromosome | 1 | 21198758 | 277 | 8.31 |
