Table 1 Differentially abundant DNA fragments mapping to their corresponding genes

From: EV DNA from pancreatic cancer patient-derived cells harbors molecular, coding, non-coding signatures and mutational hotspots

Entrez gene ID

Base mean

Fold change

log2 fold change

lfcSE

p value

p adj

Gene name

51305

52.5293

5.356389

2.519976

0.470462

8.49E-08

0.000298

potassium two pore domain channel subfamily K member 9(KCNK9)

340385

40.83501

4.19331

2.274789

0.542481

2.75E-05

0.017206

zinc finger protein 517(ZNF517)

79792

44.5353

4.876449

2.206439

0.452468

1.08E-06

0.001686

gasdermin D(GSDMD)

203054

43.64905

4.054393

2.10785

0.519893

5.03E-05

0.023628

aarF domain containing kinase 5(ADCK5)

286102

35.9425

4.055266

2.076666

0.512091

5.01E-05

0.023628

transmembrane p24 trafficking protein 10 pseudogene 1(TMED10P1)

203062

93.95212

5.727662

2.061427

0.359907

1.02E-08

4.77E-05

t-SNARE domain containing 1(TSNARE1)

51059

123.5015

6.111224

1.942543

0.317865

9.89E-10

1.39E-05

family with sequence similarity 135 member B(FAM135B)

57713

94.51126

4.404351

1.924556

0.436967

1.06E-05

0.009523

Scm like with four mbt domains 2(SFMBT2)

2765

32.24195

3.843083

1.84521

0.480138

0.000121

0.03969

glycosylphosphatidylinositol anchored molecule like(GML)

90990

51.15059

4.054229

1.839221

0.453655

5.03E-05

0.023628

kinesin family member C2(KIFC2)

340390

73.73653

4.396036

1.828317

0.415901

1.10E-05

0.009523

WD repeat domain 97(WDR97)

7587

54.95983

4.103096

1.820575

0.443708

4.08E-05

0.022905

zinc finger protein 37A(ZNF37A)

169044

217.9104

5.959427

1.80555

0.302974

2.53E-09

1.78E-05

collagen type XXII alpha 1 chain(COL22A1)

389690

96.78981

4.950125

1.796476

0.362915

7.42E-07

0.001488

maestro heat like repeat family member 5 (gene/pseudogene)(MROH5)

575

98.13776

4.229418

1.760145

0.416167

2.34E-05

0.016868

adhesion G protein-coupled receptor B1(ADGRB1)

57623

92.20973

5.256394

1.751295

0.333174

1.47E-07

0.000413

zinc finger and AT-hook domain containing(ZFAT)

23513

94.37445

4.565079

1.727285

0.378369

4.99E-06

0.005828

scribble planar cell polarity protein(SCRIB)

8629

97.41843

5.18646

1.713219

0.330325

2.14E-07

0.000502

Jrk helix-turn-helix protein(JRK)

10656

50.00904

4.018281

1.68615

0.41962

5.86E-05

0.026564

KH RNA binding domain containing, signal transduction associated 3(KHDRBS3)

11156

50.81729

3.864983

1.674666

0.433292

0.000111

0.038063

protein tyrosine phosphatase 4A3(PTP4A3)

727957

157.3975

4.548848

1.674413

0.368096

5.39E-06

0.005828

maestro heat like repeat family member 1(MROH1)

66004

58.00909

3.971569

1.667592

0.419882

7.14E-05

0.030669

Ly6/neurotoxin 1(LYNX1)

286077

81.26694

4.053481

1.632136

0.402651

5.05E-05

0.023628

family with sequence similarity 83 member H(FAM83H)

9831

48.19577

4.093406

1.6065

0.392461

4.25E-05

0.022966

zinc finger protein 623(ZNF623)

114822

71.65165

4.223848

1.589839

0.376396

2.40E-05

0.016868

rhophilin Rho GTPase binding protein 1(RHPN1)

340371

62.80066

3.909885

1.577613

0.403493

9.23E-05

0.032428

nuclear receptor binding protein 2(NRBP2)

90987

57.30882

3.956916

1.577231

0.398601

7.59E-05

0.030669

zinc finger protein 251(ZNF251)

83696

125.1061

4.89394

1.548243

0.316359

9.88E-07

0.001686

trafficking protein particle complex subunit 9(TRAPPC9)

9401

49.10256

3.831467

1.542665

0.402631

0.000127

0.040667

RecQ like helicase 4(RECQL4)

4796

76.4573

4.453242

1.533215

0.344292

8.46E-06

0.008487

tonsoku like, DNA repair protein(TONSL)

7553

62.97017

4.187755

1.527551

0.364766

2.82E-05

0.017206

zinc finger protein 7(ZNF7)

83481

154.6704

3.964448

1.512488

0.381513

7.36E-05

0.030669

epiplakin 1(EPPK1)

27161

189.1098

4.648852

1.509881

0.324786

3.34E-06

0.004262

argonaute RISC catalytic component 2(AGO2)

348645

106.8914

4.678868

1.506052

0.321884

2.88E-06

0.004052

MIR3667 host gene(MIR3667HG)

286101

58.56147

4.108216

1.469352

0.357662

3.99E-05

0.022905

zinc finger protein 252, pseudogene(ZNF252P)

5339

206.222

4.386394

1.465785

0.334166

1.15E-05

0.009523

plectin(PLEC)

80728

82.81046

3.912744

1.45889

0.372856

9.13E-05

0.032428

Rho GTPase activating protein 39(ARHGAP39)

286075

56.63698

3.955367

1.458306

0.36869

7.64E-05

0.030669

zinc finger protein 707(ZNF707)

50626

69.84278

3.938497

1.416377

0.359624

8.20E-05

0.031993

zinc finger TRAF-type containing 1(ZFTRAF1)

5747

149.4065

3.924691

1.369411

0.348922

8.68E-05

0.032428

protein tyrosine kinase 2(PTK2)

22898

130.743

4.194187

1.346491

0.321037

2.74E-05

0.017206

DENN domain containing 3(DENND3)

58500

83.49485

3.918417

1.183341

0.301995

8.91E-05

0.032428

zinc finger protein 250(ZNF250)

10071

320.1541

4.289752

0.983784

0.229333

1.79E-05

0.013959

mucin 12, cell surface associated(MUC12)

286410

97.42421

-3.84638

−1.05959

0.275479

0.00012

0.03969

ATPase phospholipid transporting 11 C(ATP11C)