Table 3 Model refinement statistics for the virion, empty virion, neck, and tail asymmetric units

From: The structure of Shigella virus Sf14 reveals the presence of two decoration proteins and two long tail fibers

Refinement Stats

Virion

Empty Virion

Neck

Tail (helical)

PDB ID

9C2D

9C3A

9C39

9C3B

Bonds (RMSD)

Length (Å)

0.004 (3)

0.009 (244)

0.004 (0)

0.007 (0)

Angles (°)

0.736 (51)

1.467 (578)

0.835 (11)

0.869 (7)

MolProbity score

2.08

2.17

2.16

2.41

Clash score

9.28

9.05

11.35

10.52

Rotamer outliers (%)

1.95

2.74

1.18

2.78

Ramachandran plot (%)

Outliers

0.67

0.76

0.79

1.38

Allowed

4.72

4.29

8.59

8.09

Favored

94.61

94.95

90.62

90.53

CC (volume)

0.87

0.84

0.86

0.89

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