Table 1 Fungal taxa from 300 avian lung cultures
Phylum | Class | Order | Genus | Species | UNITE species hypothesis | Number of cultures | Number of birds |
|---|---|---|---|---|---|---|---|
Ascomycota | Dothideomycetes | Pleosporales | Alternaria | A. alternata | SH0856386.10FU | 14 | 13 (7.9%) |
A. malorum | SH0856971.10FU | 1 | 1 (0.6%) | ||||
Ascochyta | A. medicaginicola | SH0862152.10FU | 1 | 1 (0.6%) | |||
Curvularia | Curvularia sp. | SH0856683.10FU | 2 | 2 (1.2%) | |||
Didymella | Didymella sp. | SH0862152.10FU | 5 | 5 (3.0%) | |||
Neocamarosporium | N. betae | SH0960158.10FU | 1 | 1 (0.6%) | |||
Tamaricicola | Tamaricicola sp. | SH0856892.10FU | 2 | 2 (1.2%) | |||
Cladosporiales | Cladosporium | Cladosporium sp. | SH0962330.10FU | 32 | 27 (16.5%) | ||
Dothideales | Aureobasidium | Aureobasidium sp. | SH0925964.10FU | 3 | 3 (1.8%) | ||
Incertae sedis | Coniosporium | Coniosporium sp. | SH0932560.10FU | 1 | 1 (0.6%) | ||
unclassified | unclassified | unclassified | SH1005923.10FU | 1 | 1 (0.6%) | ||
Eurotiomycetes | Chaetothyriales | Rhinocladiella | Rhinocladiella sp. | SH0986920.10FU | 3 | 2 (1.2%) | |
Eurotiales | Aspergillus | A. fumigatus | SH0940075.10FU | 16 | 11 (6.7%) | ||
A. niger | SH0731269.10FU | 12 | 8 (4.9%) | ||||
A. neoniveus | SH0984584.10FU | 1 | 1 (0.6%) | ||||
A. terreus | SH0984584.10FU | 4 | 2 (1.2%) | ||||
Aspergillus sp. 1 | SH0940487.10FU | 3 | 3 (1.8%) | ||||
Aspergillus sp. 2 | SH0940476.10FU | 1 | 1 (0.6%) | ||||
Aspergillus sp. 3 | SH0888267.10FU | 1 | 1 (0.6%) | ||||
Penicillium | P. decumbens | SH0767693.10FU | 1 | 1 (0.6%) | |||
Penicillium sp. 1 | SH0939544.10FU | 8 | 8 (4.9%) | ||||
Penicillium sp. 2 | SH0939872.10FU | 13 | 12 (7.3%) | ||||
Penicillium sp. 3 | SH0767731.10FU | 1 | 1 (0.6%) | ||||
Penicillium sp. 4 | SH0940404.10FU | 1 | 1 (0.6%) | ||||
Talaromyces | T. piceae | SH0973364.10FU | 1 | 1 (0.6%) | |||
T. minioluteus | SH0901331.10FU | 1 | 1 (0.6%) | ||||
T. pinophilus | SH0901369.10FU | 8 | 5 (3.0%) | ||||
T. purpureogenus | SH0901369.10FU | 45 | 39 (23.8%) | ||||
Onygenales | Malbranchea | M. albolutea | SH0875561.10FU | 1 | 1 (0.6%) | ||
Saccharomycetes | Saccharomycetales | Meyerozyma | M. guilliermondii | SH0887053.10FU | 4 | 4 (2.4%) | |
Sordariomycetes | Hypocreales | Beauveria | B. bassiana | SH0740100.10FU | 5 | 4 (2.4%) | |
Fusarium | FFSC sp. 1 | SH0731064.10FU | 23 | 18 (11.0%) | |||
FFSC sp. 2 | SH0731064.10FU | 14 | 12 (7.3%) | ||||
FIESC | SH0731269.10FU | 2 | 2 (1.2%) | ||||
Microascales | Microascus | M. cirrosus | SH0934581.10FU | 1 | 1 (0.6%) | ||
Myrmecridiales | Myrmecridium | M. schulzeri | SH0982314.10FU | 1 | 1 (0.6%) | ||
Sordariales | Chaetomium | C. globosum | SH0978756.10FU | 1 | 1 (0.6%) | ||
Neurospora | N. discreta | SH0904979.10FU | 2 | 2 (1.2%) | |||
Parachaetomium | Parachaetomium sp. | SH0978522.10FU | 1 | 1 (0.6%) | |||
Basidiomycota | Microbotryomycetes | Sporidiobolales | Rhodotorula | Rhodotorula sp. | SH0877557.10FU | 1 | 1 (0.6%) |
Tremellomycetes | Filobasidiales | Filobasidium | F. magnum | SH0857509.10FU | 6 | 6 (3.7%) | |
Tremellales | Papiliotrema | P. flavescens | SH1016500.10FU | 1 | 1 (0.6%) | ||
Mucoromycota | Mucoromycetes | Mucorales | Lichtheimia | L. corymbifera | SH0855590.10FU | 1 | 1 (0.6%) |
L. ramosa | SH0884010.10FU | 2 | 2 (1.2%) | ||||
Mucor | M. irregularis | SH1020240.10FU | 1 | 1 (0.6%) | |||
M. circinelloides | SH0747765.10FU | 3 | 3 (1.8%) | ||||
Rhizopus | R. arrhizus | SH0980336.10FU | 46 | 45 (27.4%) |
