Table 3 Organisms with genomes encoding for both a complete TCA cycle (KEGG module: M00009) and WLP (KEGG module: M00377) as well as the gene for 2-oxoglutarate:ferredoxin oxidoreductase [EC:1.2.7.3 1.2.7.11]

From: Chemoorganoautotrophic lifestyle of the anaerobic enrichment culture N47 growing on naphthalene

Organism

Taxonomy

Environment

Genes for HC degradation

BioProject

Candidatus Desulfobacterium strain N4710,12,14,22,48

Bacteria; Desulfobacterota; Desulfobacteria; Desulfobacterales; Desulfosarcinaceae

Enriched from contaminated aquifer near Stuttgart, Germany

yes

FR695864-FR695880 &

GU080088, GU080089, GU080116-GU080137,

GU080090-GU080115

PRJNA1066605

TRIP_141

Bacteria; Desulfobacterota; Desulfobacteria, Desulfobacterales; Desulfobacteraceae

Pitch Lake in Trinidad-Tobago

yes

PRJNA479783

Strain NaphS2 DSM 1445413,42

Bacteria; Desulfobacterota

Black anoxic marine sediment

yes

PRJNA46635

Desulfosarcina alkanivorans PL1244

Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfosarcinaceae; Desulfosarcina

Obtained from oil-polluted marine sediments of Shuaiba, Kuwait

yes

PRJDB8884

Desulfatibacillum aliphaticivorans AK-01

(Desulfatibacillum alkenivorans AK-01)45

Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfatibacillaceae; Desulfatibacillum

Petroleum-contaminated sediment collected from the Arthur Kill, an intertidal waterway between Staten Island and New Jersey

yes

PRJNA19449

Desulfococcus oleovorans Hxd346

Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfosudaceae; Desulfosudis

Oil/water mixture from an oil production plant

yes

PRJNA18007

Desulfoluna limicola ASN3675

Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfolunaceae; Desulfoluna

Isolated from a sample of sediment collected in a brackish lake, Lake Akkeshi in Japan (43.05 deg N 144.89 deg E).

potentially

PRJDB11192

Desulfomonile tiedjei DSM 679976

Bacteria; Thermodesulfobacteriota; Desulfomonilia; Desulfomonilales; Desulfomonilaceae; Desulfomonile

Sewage sludge

potentially

PRJNA43133

Candidatus Brocadia pituitae 317325-177

Bacteria; Planctomycetota; Candidatus Brocadiia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia

Obtained from the anammox bacterial community (ABC) metagenome

no

PRJDB4337

Candidatus Jettenia sp. AM4977

Bacteria; Planctomycetota; Candidatus Brocadiia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Jettenia

Observed at the walls of the formate reactors

no

PRJNA556270

SEEP-SRB143

Bacteria; Desulfobacterota; Desulfobacteria, Desulfobacterales; Desulfosarcinaceae

Marine sediments

potentially

PRJNA326769

PRJNA290197

  1. Organisms were found by KEGG database brite hierarchy search73 and literature hits. Genomes can be accessed via BioProject numbers. Last KEGG database search: 17.07.2023. HC, hydrocarbon degradation. In column “Genes for HC degradation” the term “potentially” indicates that single genes involved in hydrocarbon degradation pathways were found in the genome or that close related organisms are capable of hydrocarbon degradation, but oil degradation was not found to be approved by experiments for this specific organism.