Table 3 Organisms with genomes encoding for both a complete TCA cycle (KEGG module: M00009) and WLP (KEGG module: M00377) as well as the gene for 2-oxoglutarate:ferredoxin oxidoreductase [EC:1.2.7.3 1.2.7.11]
From: Chemoorganoautotrophic lifestyle of the anaerobic enrichment culture N47 growing on naphthalene
Organism | Taxonomy | Environment | Genes for HC degradation | BioProject |
---|---|---|---|---|
Bacteria; Desulfobacterota; Desulfobacteria; Desulfobacterales; Desulfosarcinaceae | Enriched from contaminated aquifer near Stuttgart, Germany | yes | FR695864-FR695880 & GU080088, GU080089, GU080116-GU080137, GU080090-GU080115 PRJNA1066605 | |
TRIP_141 | Bacteria; Desulfobacterota; Desulfobacteria, Desulfobacterales; Desulfobacteraceae | Pitch Lake in Trinidad-Tobago | yes | PRJNA479783 |
Bacteria; Desulfobacterota | Black anoxic marine sediment | yes | PRJNA46635 | |
Desulfosarcina alkanivorans PL1244 | Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfosarcinaceae; Desulfosarcina | Obtained from oil-polluted marine sediments of Shuaiba, Kuwait | yes | PRJDB8884 |
Desulfatibacillum aliphaticivorans AK-01 (Desulfatibacillum alkenivorans AK-01)45 | Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfatibacillaceae; Desulfatibacillum | Petroleum-contaminated sediment collected from the Arthur Kill, an intertidal waterway between Staten Island and New Jersey | yes | PRJNA19449 |
Desulfococcus oleovorans Hxd346 | Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfosudaceae; Desulfosudis | Oil/water mixture from an oil production plant | yes | PRJNA18007 |
Desulfoluna limicola ASN3675 | Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfolunaceae; Desulfoluna | Isolated from a sample of sediment collected in a brackish lake, Lake Akkeshi in Japan (43.05 deg N 144.89 deg E). | potentially | PRJDB11192 |
Desulfomonile tiedjei DSM 679976 | Bacteria; Thermodesulfobacteriota; Desulfomonilia; Desulfomonilales; Desulfomonilaceae; Desulfomonile | Sewage sludge | potentially | PRJNA43133 |
Candidatus Brocadia pituitae 317325-177 | Bacteria; Planctomycetota; Candidatus Brocadiia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia | Obtained from the anammox bacterial community (ABC) metagenome | no | PRJDB4337 |
Candidatus Jettenia sp. AM4977 | Bacteria; Planctomycetota; Candidatus Brocadiia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Jettenia | Observed at the walls of the formate reactors | no | PRJNA556270 |
SEEP-SRB143 | Bacteria; Desulfobacterota; Desulfobacteria, Desulfobacterales; Desulfosarcinaceae | Marine sediments | potentially | PRJNA326769 PRJNA290197 |