Table 1 Top six ranked clusters contributing to the infection time-specific t-SNE sample signatures

1

Mac-6

Neu-1

Mon-6

T-7

B-1

CD38⁺MHCII^-BAMs

CD14^hiTLR2⁺Neu

CD14^loLy6C^-Mon

CD8⁺Tem

CCR6⁺MHCII^hi B

2

DCs-1

Mac-5

Mac-9

ILC-3

B-6

TLR2^loCD11b⁺ DCs

CD14^loMHCII^-Mφ

CD38^loMφ

MHCII^hiILC3

CD11b^hi CX3CR1⁺B

3

ILC-12

Mon-1

T-9

T-1

Mac-2

CD11b^hiKLRG1⁺ NK

CD14⁺Ly6C⁺Mon

KLRG1⁺ CX3CR1⁺ CD8⁺Tem

CD4⁺Tem

Ly6C⁺CD14^hi Mφ

4

DCs-5

ILC-7

DCs-6

T-13

ILC-1

PD-L1^loCD11b⁺ DC

CD11b^loKLRG1^- NK

CX3CR1⁺CD11b⁺ DCs

CD11b^hiCD8⁺T

MHCII^-ILC3

5

Microglia-3

Mon-3

T-8

DCs-11

B-3

MHCII^-Ki-67^-Microglia

CD14⁺Ly6C⁺ CX3CR1^hiMon

CD11c⁺CD8⁺ Tem

CX3CR1^-CD11b⁺ DCs

CD11b^loB

6

B-4

Neu-6

T-5

T-4

B-2

CD19^loB

CD14^hiCX3CR1⁺Neu

CD8⁺Tem

KLRG1⁺CD4⁺ Tem

CD38^hiMHCII^hiB