Table 1 Evaluation of unoptimized and optimized ensembles with experimental data.

From: Extended experimental inferential structure determination method in determining the structural ensembles of disordered protein states

Experimental data type

UNOPTIMIZED

OPTIMIZED

 

X-EISD Score

RMSD

X-EISD Score

RMSD

RANDOM

    

267 CSs (ppm)

99.6 (0.8)

0.58 (0.01)

103.6 (0.7)

0.55 (0.01)

47 JCs (Hz)

−82.2 (4.1)

0.91 (0.01)

−25.7 (2.4)

0.70 (0.01)

28 RDCs (Hz)

−59.7 (1.1)

1.23 (0.06)

−55.4 (0.6)

0.98 (0.04)

93 NOEs (Å)

497.3 (5.4)

4.63 (0.23)

528.5 (1.5)

3.06 (0.10)

68 PREs (Å)

−238.4 (186.3)

6.11 (0.74)

450.0 (4.4)

1.24 (0.12)

smFRET <E>

−17.4 (13.4)

0.14 (0.04)

6.9 (0.1)

0.01 (0.00)

Rh (Å)

−0.9 (0.3)

0.78 (0.30)

−0.4 (0.0)

0.14 (0.10)

SAXS (Intensity)

448.9 (2.9)

0.004 (0.001)

456.3 (0.4)

0.002 (0.000)

ENSEMBLE

    

267 CSs (ppm)

108.7 (0.7)

0.52 (0.01)

110.1 (0.4)

0.51 (0.00)

47 JCs (Hz)

34.4 (1.8)

0.30 (0.02)

43.3 (0.5)

0.18 (0.01)

28 RDCs (Hz)

−51.8 (0.6)

0.70 (0.05)

−50.4 (0.2)

0.56 (0.03)

93 NOEs (Å)

517.7 (5.7)

3.80 (0.36)

539.0 (0.6)

2.33 (0.05)

68 PREs (Å)

0.55 (0.01)

3.33 (0.80)

458.7 (4.2)

0.92 (0.11)

smFRET <E>

0.70 (0.01)

0.07 (0.03)

7.0 (0.0)

0.00 (0.00)

Rh (Å)

0.98 (0.04)

0.30 (0.11)

−0.8 (0.0)

0.71 (0.04)

SAXS (Intensity)

3.06 (0.10)

0.004 (0.001)

457.9 (0.2)

0.001 (0.000)

MIXED

    

267 CSs (ppm)

110.1 (0.9)

0.49 (0.01)

111.5 (0.5)

0.49 (0.01)

47 JCs (Hz)

−6.1 (7.1)

0.60 (0.04)

41.4 (0.7)

0.21 (0.01)

28 RDCs (Hz)

−54.7 (0.9)

0.93 (0.06)

−50.7 (0.3)

0.60 (0.03)

93 NOEs (Å)

514.2 (4.7)

3.91 (0.25)

539.4 (0.7)

2.28 (0.07)

68 PREs (Å)

155.5 (142.8)

3.89 (0.77)

458.6 (4.3)

0.92 (0.11)

smFRET <E>

−4.6 (8.3)

0.10 (0.04)

6.9 (0.0)

0.01 (0.00)

Rh (Å)

−0.5 (0.1)

0.25 (0.18)

−0.7 (0.0)

0.69 (0.05)

SAXS (Intensity)

451.9 (2.6)

0.004 (0.001)

458.0 (0.2)

0.001 (0.000)