Fig. 8: Changes of the ESP atomic charge during succinimide formation. | Communications Chemistry

Fig. 8: Changes of the ESP atomic charge during succinimide formation.

From: Kinetic, thermodynamic, and ab initio insights of AsnGly isomerisation as a ticking time bomb for protein integrity

Fig. 8

a For the waterless, and (b) for the water assisted reactions on the basis of NBO data (for NBO data see Supplementary Figs. 2226 within Supplementary Information, Supplementary Tables 212 within Supplementary Information, and Supplementary Note 1 within Supplementary Data 2, Supplementary Tables 118 within Supplementary Data 2). The IRC paths were calculated in vacuum at the B3LYP/6-31+G(d,p) level of theory. The molecular energy reference point is the optimised „open” conformer of asparagine, calculated at the same level of theory. c The „open” conformer of the QM determined asparagine model with the incorporated water molecule assisting the succinimide formation. d ESP atomic charge differences ΔQ(ξ)= QCγ Asn(ξ) – QNGly(ξ) along the reaction path, during succinimide formation. Charge differences vs. reaction coordinate, ξ, as calculated in vacuum at the B3LYP/6-31+G(d,p) level of theory.

Back to article page