Table 1 XFEL data processing and refinement statistics of F393H of P450BM3

From: XFEL crystallography reveals catalytic cycle dynamics during non-native substrate oxidation by cytochrome P450BM3

 

Oxidised

Reduced

Oxygen-bound

Data collection

  Beamline

SACLA BL2 EH3

SACLA BL2 EH3

SACLA BL2 EH3

  No. of mesh loops

32

48

96

  Data collection time (h)

4.3

6.4

13.0

  No. of hits

22,925

30,786

67,757

  No. of indexed

15,946

22,930

50,478

  Space group

P 212121

P 212121

P 212121

  Cell dimensions

  a, b, c (Å)

58.91, 128.64, 149.45

58.83, 128.43, 149.53

58.83, 128.51, 149.42

  Resolution (Å)

10.00–1.80 (1.82–1.80)

10.00–1.60) (1.61–1.60)

10.00–1.50 (1.51–1.50)

  CC1/2

0.981 (0.663)

0.973 (0.567)

0.991 (0.438)

  I / σI

7.12 (2.07)

6.55 (1.63)

7.82 (1.24)

  Completeness (%)

100.00 (100.0)

100.00 (100.00)

100.00 (99.96)

  Redundancy

117.8 (28.1)

158.9 (29.6)

293.1 (18.2)

Refinement

  Resolution (Å)

10.00–1.80

10.00–1.60

10.00–1.50

  No. reflections

105,207

149,070

180,525

  Rwork/Rfree

0.172/0.211

0.175/0.205

0.180/0.209

  No. atoms

        Protein

7400

7357

7371

        Ligand/ion

186

218

206

        Water

814

875

779

  B-factors (Å2)

        Protein

41.4

40.0

39.9

        Ligand/ion

38.0

38.7

38.3

        Water

47.8

48.4

47.4

  R.m.s. deviations

        Bond lengths (Å)

0.008

0.007

0.007

        Bond angles (°)

1.020

0.990

0.977

  DPI (Å)

0.105

0.075

0.064

  PDB code

8YAY

8YB0

8YB2

  1. Values in parentheses refer to the highest-resolution shell. The diffraction precision index (DPI) was calculated using the online server (http://cluster.physics.iisc.ac.in/dpi/).