Table 2 Criteria for the principal components (PC) scores determining the sets of residues of particular dynamics

From: Mechanistic insight into the dynamics of Mur ligase through a comprehensive timescale-specific approach

Criteria

Description and interpretation

Corresponding group of data set in Fig. 3

\({{{\rm{PC}}}}1 > \sqrt{{{{{\rm{PC}}}}2}^{2}+{{{{\rm{PC}}}}3}^{2}}\)

Residues, where the decreased J(0) compensates for the increased J(0.87ωH) and J(ωN) (i.e., increased fast ps-ns dynamics) and this compensation effect prevails over the other two mechanisms (explained by PC2 and PC3)

G1, orange spheres in Fig. 3

\(-{{{\rm{PC}}}}1 > \sqrt{{{{{\rm{PC}}}}2}^{2}+{{{{\rm{PC}}}}3}^{2}}\)

Residues, where the increased J(0) compensates for the decreased J(0.87ωH) and J(ωN) (i.e., decreased fast ps-ns dynamics) and this compensation effect prevails over the other two mechanisms (explained by PC2 and PC3)

G2, blue spheres in Fig. 3

\({{{\rm{PC}}}}2 > \sqrt{{{{{\rm{PC}}}}1}^{2}+{{{{\rm{PC}}}}3}^{2}}\)

Residues, where J(0) (and less evidently J(ωN)) is increased without compensation on the time scale defined by J(0.87ωH) and this effect prevails over the other two mechanisms (explained by PC1 and PC3)

G3, yellow spheres in Fig. 3

\({{{\rm{PC}}}}3 > \sqrt{{{{{\rm{PC}}}}1}^{2}+{{{{\rm{PC}}}}2}^{2}}\)

Residues, where the decreased J(ωN) compensates for the increased J(0.87ωH) and this compensation effect prevails over the other two mechanisms (explained by PC1 and PC2)#

G4, pink spheres in Fig. 3

\(-{{{\rm{PC}}}}3 > \sqrt{{{{{\rm{PC}}}}1}^{2}+{{{{\rm{PC}}}}2}^{2}}\)

Residues, where the increased J(ωN) compensates for the decreased J(0.87ωH) and this compensation effect prevails over the other two mechanisms (explained by PC1 and PC2)#

G5, green spheres in Fig. 3

  1. PC1 stands for the scores of the first principal component, PC2 for the scores of the second principal component and PC3 for the scores of the third principal component. The notation # in the table indicates a deviation from the given description for MurDinh, as explained in the text following Table 1.