Extended Data Fig. 4: Model performance for different number of SSVM models.

Performance comparison of LC-MS2Struct against using only-MS2 information (Only-MS2) for different number of SSVM models. The performance curves for the three MS2-scorers are shown separately. The top-k accuracies shown are averaged accuracies over 354 sample MS feature sequences (LC-MS2 experiments) from the ALLDATA setting.