Table 1 Comparison of SimuCell3D with existing 3D DCM models
From: SimuCell3D: three-dimensional simulation of tissue mechanics with cell polarization
Program name | Pub. year | No. of cells after 1 d of computation | Adjustable spatial resolution | Automatic mesh remodeling | Cell divisions | Cell polarization | Nuclei | ECM | Lumen | OS | Lic. | Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
SimuCell3D | 2024 | 125,000 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | BSD-3 | — |
2023 | unknown | ✓ | ✓ | ✓ | ✗ | ✗ | ✗ | ✗ | ✗ | — | ||
2023 | unknown | ✓ | ✓ | ✓ | ✓ | ✗ | ✗ | ✗ | ✗ | — | ||
IAS | 2022 | 4 | ✓ | ✓ | ✓ | ✗ | ✗ | ✗ | ✗ | ✓ | CC | |
2020 | <1,000 | ✓ | ✗ | ✓ | ✓ | ✓ | ✗ | ✗ | ✗ | — | ||
CellSim3D | 2018 | 75,000 | ✗ | ✗ | ✓ | ✗ | ✗ | ✗ | ✗ | ✓ | GPLv2 | |
2014 | starting number | ✓ | ✓ | ✗ | ✗ | ✗ | ✗ | ✗ | ✓ | BSD-2 | ||
2013 | starting number | ✓ | ✓ | ✗ | ✗ | ✗ | ✗ | ✗ | ✗ | — | ||
The Surface Evolver | 1992 | starting number | ✓ | ✗ | ✗ | ✗ | ✗ | ✗ | ✗ | ✓ | — |
