Fig. 2: Metagenomic analysis of CPR samples. | ISME Communications

Fig. 2: Metagenomic analysis of CPR samples.

From: Aquatic reservoir of Vibrio cholerae in an African Great Lake assessed by large scale plankton sampling and ultrasensitive molecular methods

Fig. 2

Phylogenetic analysis (a, b) of the reconstructed V. cholerae metagenome-assembled genome (MAG) sequence (indicated by arrows) based on average nucleotide identity with Vibrio reference genomes. Strain genomes (b) matching a 351,222,423 read sequence metagenome obtained by targeted and shotgun metagenomic analysis of CPR samples are shown (matches are indicated by yellow stars and defined by taxonomic profiling analysis of the metagenome against 466 V. cholerae genomes). c Read mapping analysis of the produced metagenome against the virulence factor database (http://www.mgc.ac.cn/VFs/). Only those reads uniquely mapping at a reference position were included in the analysis and further checked for specificity using BLAST against nucleotide collection (nr/nt) and RefSeq Genome databases.

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