Table 1 Model components.
From: Dynamic carbon flux network of a diverse marine microbial community
Phytoplankton | Bacteria |
|---|---|
Chlorophyll a (BBE) (chl) [S] | Total bacteria by DAPI (dap) [S] |
Diatoms (dia) [S] | EUB338-I-III, Eubacteria (eub) [S] |
Diatoms—Pennales (dip) | ALF968, Alphaproteobacteria (alf) [S] |
Diatoms—Centrales (dic) [S] | SAR11–486, SAR11, Alphaproteobacteria (s48) |
Greenalgae (gre) | SAR11–441, SAR11, Alphaproteobacteria (s44) |
Dinoflagellates (dif) [S] | ROS537, Roseobacter, Alphaproteobacteria (ros) [S] |
Silicoflagellates (sif) | NAC11-7-1030, Nac11, Roseobacter (nac) |
Coccolithophorids (coc) | RCA1000, RCA/DC5, Roseobacter (rca) |
Mediopyxis helysia (mhe) | GAM42a, Gammaproteobacteria (gam) [S] |
Chaetoceros debilis (cde) | REI731, Reinekea, Gammaproteobacteria (rei) |
Chaetoceros minimus (cmi) | Bal731, Balneatrix, Gammaproteobacteria (bal) |
Rhizosolenia styliformis (rst) | OM182–707, OM182, Gammaproteobacteria (om1) |
Thalassiosira nordenskioeldii (tno) | NOR5–730, NOR5, Gammaproteobacteria (nor) |
Dinophyceae (din) | PSA184, Pseudoalteromonas, Gammaproteobacteria (psa) |
Phaeocystis (pha) | ALT1413, Alteromonas, Gammaproteobacteria (alt) |
Chattonella (cha) | GV841, Vibrio, Gammaproteobacteria (gv8) |
Cryptic: (dix), (dxf), (ph1) | SAR92–627, SAR92, Gammaproteobacteria (s92) |
SAR86–1245, SAR86, Gammaproteobacteria (s86) | |
POM and DOM | Glac227, Glaciecola, Gammaproteobacteria (gla) |
POC (poc) [S] | CF319a, Bacteroidetes (cf3) [S] |
DOC (doc) [S] | POL740, Polaribacter, Bacteroidetes (pol) |
Arabinose (ara) [S] | FORM181A, Formosa, Bacteroidetes (foa) [S] |
Fucose (fuc) [S] | FORM181B, Formosa Hel1_33_131, Bacteroidetes (fob) |
Galactose (gal) [S] | ULV995, Ulvibacter, Bacteroidetes (ulv) |
Glucose (glc) [S] | VIS6–814, VIS6, Bacteroidetes (vis) |
Mannose/xylose (max) [S] | NS3a-840, NS3a marine group, Bacteroidetes (ns3) |
Rhamnose (rha) [S] | NS5/DE2–471, NS5/DE2, Bacteroidetes (nde) |
Galacturonic acid (gau) [S] | NS5/VIS1–575, VIS1, NS5 (nvi) |
Gluconic acid (glu) [S] | NS9–664, NS9 marine group, Bacteroidetes (ns9) |
Glucuronic acid (gca) [S] | CYT-734, Marinoscillum, Bacteroidetes (cyt) |
Muramic acid (mur) [S] | PLA46, Planctomycetes (pa4) [S] |
Galactosamine (gan) [S] | PirD1039, Pirellula, Planctomycetes (pir) |
Glucosamine (gln) [S] | uPlaB440, Planctomycetes group B (upl) |
Chitin (chi) | PlaA1228, Planctomycetes group A (pa1) |
Chrysolaminarin (chr) | ARCH915, Archaea (arc) [S] |
Glycogen (gly) | EURY806, Euryarcheota (eur) |
Xylan (xyl) | CREN554, Crenarcheota (cre) |
Cellulose (cel) | BET42a, Betaproteobacteria (bet) |
Mannan (man) | SAR324–1412, SAR 324, Deltaproteobacteria (s32) |
Starch (sta) | HGC69a, Actinobacteria (hgc) |
Pectin (pec) | Cryptic: (eux), (alx), (rox), (gax), (cfx), (fox), (px4), (arx) |
Glucoromannan (glo) | |
FCSP (fcs) | Nutrients and misc. |
Rhamnan (rhm) | Nitrate+nitrite (nox) |
POM Chrysolaminarin (lam) [S] | Ammonium (nh4) |
Biogenic silica (bsi) | Phosphate (po4) |
Cryptic: (d01+), (ar2), (fu2), (ga2), (gl2), (ma2), (rh2), (ga3), (gl3), (gc2), (mu2), (ga4), (gl4), (m01+), (i01+), (p01+), (pra), (puc), (pal), (plc), (pax), (xph), (pau), (plu), (pca), (pur), (pan), (pln), (phi), (phr), (ply), (pyl), (pel), (xpa), (pta), (xpe), (plo), (pcs), (phm) | Silicate (sil) Light extinction coefficient (kex) [S] Inorganic suspended solids (nkx) |
