Fig. 1: Phylogenetic affiliation, average genome size, and correlation between genome size and gcd gene copy number among the 79 GCD-MAGs (particular genes involved in P cycling are shown in Table S3). | ISME Communications

Fig. 1: Phylogenetic affiliation, average genome size, and correlation between genome size and gcd gene copy number among the 79 GCD-MAGs (particular genes involved in P cycling are shown in Table S3).

From: Genome-resolved metagenomics identifies the particular genetic traits of phosphate-solubilizing bacteria in agricultural soil

Fig. 1

Phylogenetic affiliation of the 79 GCD-MAGs detected across six agroecosystems in China (a). Number of GCD-MAGs, average genome size, and genome-averaged gcd copy number of GCD-MAGs affiliated with a particular bacterial family. The number of GCD-MAGs obtained for each family is given in bold. The genome-averaged gcd copy number of GCD-MAGs is indicated by color (see scale) (b). Significant correlation between genome size and gcd gene copy number (Pearson correlation; P < 0.001) (c). Distribution range of genome size, GH (glycoside hydrolases) gene ratio, and functional diversity between genotypes that contain or do not contain gcd. This dataset is composed of the 472 MAGs obtained in this study (d). Functional diversity is represented by the Shannon index and was calculated based on 10,799 KEGG-queried genes. Functional traits whose presence significantly (P < 0.05) differs between GCD-MAGs and non-GCD-MAGs. The analysis was performed at KEGG level 3 using DESeq2 and involved the 472 MAGs obtained in this study (e).

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