Fig. 2: Phylogenetic trees from E. coli.
From: High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS
The tree scale shows the number of edits per base per unit length. a After two rounds of clustering, 628 E. coli RoC-ITS sequences (out of 708 initial reads) were combined with the seven E. coli K12 reference 16S-ITS sequences, multiply aligned, and converted into an unrooted phylogenetic tree. Bootstrap values are shown for the primary branches. Each of the seven highlighted clades corresponds to one of the reference 16S-ITS sequences, numbered based on their distance from the origin (closest to furthest), along with the number of RoC-ITS sequences associated with each clade. b Consensus sequences after clustering RoC-ITS sequences at 99.5% identity. The unrooted phylogenetic tree shows these consensus sequences along with the E. coli K12 reference 16S-ITS sequences.
