Table 2 Abundance of cd-hit clustered Illumina and RoC-ITS data at various taxonomic levels.
From: High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS
Phylum | Class | Genus | # of Illumina V4 Reads | # of RoC-ITS Sequences | |
|---|---|---|---|---|---|
1 | Bacteroidetes | Bacteroidia | Flavobacterium | 55,508 | 981 |
2 | Actinobacteria | Actinobacteria | Micrococcus | 38,772 | 299 |
3 | Proteobacteria | Gammaproteobacteria | Pseudomonas | 28,598 | 492 |
4 | Proteobacteria | Gammaproteobacteria | Pseudomonas | 26,951 | 330 |
5 | Firmicutes | Bacilli | Bacillus | 26,521 | 516 |
6 | Proteobacteria | Gammaproteobacteria | Duganella | 12,681 | 162 |
7 | Proteobacteria | Gammaproteobacteria | Pseudomonas | 12,313 | 143 |
8 | Proteobacteria | Gammaproteobacteria | Pseudomonas | 11,697 | 118 |
9 | Bacteroidetes | Bacteroidia | Mucilaginibacter | 9,373 | 175 |
10 | Proteobacteria | Alphaproteobacteria | Bradyrhizobium | 4,135 | 85 |
11 | Actinobacteria | Actinobacteria | Micrococcus | 3,570 | 11 |
12 | Firmicutes | Bacilli | Bacillus | 3,109 | 68 |
13 | Firmicutes | Bacilli | Bacillus | 2,784 | 62 |
14 | Bacteroidetes | Bacteroidia | Pedobacter | 1,723 | 104 |
15 | Proteobacteria | Gammaproteobacteria | Pseudomonas | 1,604 | 18 |
16 | Proteobacteria | Alphaproteobacteria | Inquilinus | 529 | 1 |
17 | Actinobacteria | Actinobacteria | Rhodococcus | 84 | 1 |
18 | Actinobacteria | Actinobacteria | Mycobacterium | 36 | 2 |
Total= | 3568 |
