Table 2 KEGG pathways for core trait-attributes present in greater than 19 genomes.

From: TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome

Module description

Number of attributes

Citrate cycle, second carbon oxidation, 2-oxoglutarate =>  oxaloacetate [PATH:map00020 map01200 map01100]

13

Citrate cycle (TCA cycle, Krebs cycle) [PATH:map00020 map01200 map01100]

10

Shikimate pathway, phosphoenolpyruvate + erythrose-4P = > chorismate [PATH:map00400 map01230 map01100 map01110]

8

Fatty acid biosynthesis, initiation [PATH:map00061 map01212 map01100]

7

Glycolysis, core module involving three-carbon compounds [PATH:map00010 map01200 map01230 map01100]

7

Adenine ribonucleotide biosynthesis, IMP = > ADP,ATP [PATH:map00230 map01100]

4

Guanine ribonucleotide biosynthesis IMP = > GDP,GTP [PATH:map00230 map01100]

4

Inosine monophosphate biosynthesis, PRPP + glutamine =>  IMP [PATH:map00230 map01100]

4

Isoleucine biosynthesis, threonine =>  2-oxobutanoate =>  isoleucine [PATH:map00290 map01230 map01100]

3

NADH:quinone oxidoreductase, prokaryotes [PATH:map00190]

3

beta-Oxidation, acyl-CoA synthesis [PATH:map00061 map00071 map01212 map01100]

2

F-type ATPase, prokaryotes and chloroplasts [PATH:map00190 map00195]

2

Valine/isoleucine biosynthesis, pyruvate =>  valine / 2-oxobutanoate =>  isoleucine [PATH:map00290 map00770 map01210 map01230 map01100 map01110]

2

CAM (Crassulacean acid metabolism), dark [PATH:map00620 map00710 map01200 map01100 map01120]

1

Cytochrome c oxidase, cbb3-type [PATH:map00190]

1

Cytochrome c oxidase, prokaryotes [PATH:map00190]

1

dTDP-L-rhamnose biosynthesis [PATH:map00521 map00523 map01100 map01130]

1

Leucine biosynthesis, 2-oxoisovalerate =>  2-oxoisocaproate [PATH:map00290 map01210 map01230 map01100 map01110]

1

Phosphatidylethanolamine (PE) biosynthesis, PA = > PS = > PE [PATH:map00564 map01100]

1

PRPP biosynthesis, ribose 5 P = > PRPP [PATH:map00030 map00230 map01200 map01230 map01100]

1

Pyruvate oxidation, pyruvate =>  acetyl-CoA [PATH:map00010 map00020 map00620 map01200 map01100]

1

Semi-phosphorylative Entner-Doudoroff pathway, gluconate =>  glycerate-3P [PATH:map00030 map01200 map01100 map01120]

1

Threonine biosynthesis, aspartate =>  homoserine =>  threonine [PATH:map00260 map01230 map01100 map01110]

1

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