Table 2 The proportion (%) of isolates (first isolate per person) with virulence genes per GG.

Virulence	Gene	GG0001 (n = 250)	GG0005 (n = 620)	GG0008 (n = 554)	GG0022 (n = 507)	GG0030 (n = 284)	GG0059 (n = 106)	GG0080 (n = 69)	GG0398 (n = 1516)	GG1045 (n = 103)	GG2045 (n = 114)	Other GGs (n = 675)	All GGs (n = 4798)
HostImmunity	ACME	0.4	5	24	1	1			0.1		11	0.3	4
	sak	90	83	87	89	99	22	96	12	98	90	75	61
	scn	91	83	87	89	99	98	97	12	98	90	84	64
Toxin	edinA		6									0.3	1
	edinB							99				1	2
	edinC											4	1
	eta								0.1			6	1
	etb											4	1
	hlgA	99.6	100	99.8	47	99	99	100	99.7	100	98	99	94
	hlgB	99	99.5	99	100	100	99	100	99.9	100	100	99	99.5
	hlgC	100	99	98	99	99.6	100	97	99.7	87	95	99	99
	lukD	99.6	98	95				100				84	42
	lukE	98	88	91				97				79	40
	lukF-PV	17	19	70	20	78	66	83	7			25	27
	lukS-PV	17	19	70	22	78	66	83	7			25	27
	tst	2	10	3	62	16			0.1	1	4	1	10
Exoenzyme	aur	99	97	97	99.8	99.6	100	100	99.9	100	98	99	99
	splA	99	100	82				100				72	39
	splB	98	99	84				100				101	43
	splE	29		82		88						49	23
Enterotoxin	sea	29	5	8	7	7	6		0.4		5	24	8
	seb	2	5	3			86	3	3		4	4	5
	sec	2	6	0.2	24	1				1	39	16	7
	seg		100		99	99				95	97	24	37
	seh	99.6											5
	sei		98		99	98				96	99	30	38
	sej		49	23						89	2	0.3	11
	sek	28	0.5	62		0.4	84	3	0.2		6	2	11
	sel	2	6	0.2	24	1			0.2	1	46	10	6
	sem		98		97	97				97	100	30	37
	sen		99		98	100				90	95	29	37
	seo		99		99	98				38	100	30	36
	sep	0.4	43	1		0.4	5		0.3			8	7
	seq	29	0.5	60		0.4	83	3	0.2		6	2	11
	ser		46	22						89	2	0.1	11
	seu					99.6						7	7

Only the results of Top10 GGs are displayed in detail. N, number of isolates per GG. n and %, number and percentage of isolates with virulence factor per GG.

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