Figure 2: Kegg pathway coverage.
From: The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
(top) Using the pathway classifications provided by KEGG, we can determine how many annotated proteins were identified in mass spectrometry data. The cysteine and methionine metabolism pathway is provided as an example. For each organism, we calculate the percentage of identified proteins. C. flavigena has 23 proteins in the pathway, 21 of which were observed (91%). The box plot shows average coverage of the 103 organisms that KEGG has annotated. Circles depict outliers. (bottom) Pathway coverage for all 13 amino acid metabolic pathways is shown.
