Table 9 Complete Genomics WGS Summary Metrics.
From: Extensive sequencing of seven human genomes to characterize benchmark reference materials
Subject | NA12878 (HG001) | AJ Son (HG002) | AJ mother (HG004) | AJ father (HG003) | Chinese Son (HG005) | Chinese Son (GM24631) | Chinese mother (GM24695) | Chinese father (GM24694) |
|---|---|---|---|---|---|---|---|---|
Fully called genome fraction | 0.975 | 0.977 | 0.975 | 0.976 | 0.976 | 0.976 | 0.974 | 0.976 |
Gross mapping yield (Gb) | 341 | 360 | 376 | 350 | 356 | 353 | 352 | 355 |
Both mates mapped yield (Gb) | 313 | 322 | 351 | 313 | 320 | 318 | 314 | 318 |
Mate distribution mean | 389 | 395 | 405 | 386 | 395 | 374 | 379 | 387 |
SNP total count (PASS only) | 3449567 | 3463164 | 3501307 | 3436943 | 3431805 | 3424251 | 3445736 | 3407542 |
SNP transitions/transversions ratio (PASS only) | 2.125 | 2.127 | 2.122 | 2.128 | 2.126 | 2.128 | 2.125 | 2.127 |
