Table 3 Complete Genomics data locations.
From: Extensive sequencing of seven human genomes to characterize benchmark reference materials
Genome | File types | Location |
|---|---|---|
HG001 | VCF | /data/NA12878/analysis/variant_calls/COMPLETE/Library2/ |
HG001 | BAM | /data/NA12878/CompleteGenomics_normal_RMDNA/alignment/Library2/ |
HG001 | Full package | /technical/complete_data/HG001_NA12878_normalCG/GS000025639-ASM/EXP/GS02256-DNA_A01/ |
Ashekenazi trio | Multi-sample VCF | /data/AshkenazimTrio/analysis/CompleteGenomics_RefMaterial_SmallVariants_CGAtools_08082014/AshkenaziTrio_RefMaterial_SmallVariants.vcf |
HG002 | BAM, VCF, reference scores | /data/AshkenazimTrio/HG002_NA24385_son/CompleteGenomics_normal_RMDNA/son_NA24385_GS000037263-ASM/ |
HG002 | Full package | /technical/complete_data/trios/native_format_data/GS000043892-DID/GS000037263-ASM/ |
HG004 | BAM, VCF, reference scores | /data/AshkenazimTrio/HG004_NA24143_mother/CompleteGenomics_normal_RMDNA/mom_NA24143_GS000037262-ASM/ |
HG004 | Full package | /technical/complete_data/trios/native_format_data/GS000043891-DID/GS000037262-ASM/ |
HG003 | BAM, VCF, reference scores | /data/AshkenazimTrio/HG003_NA24149_father/CompleteGenomics_normal_RMDNA/dad_NA24149_GS000037264-ASM/ |
HG003 | Full package | /technical/complete_data/trios/native_format_data/GS000043893-DID/GS000037264-ASM/ |
Han trio (Coriell cells) | Multi-sample VCF | /data/ChineseTrio/analysis/CompleteGenomics_HanTrio_ExtractedFromCoriellCells_SmallVariants_CGAtools_08082014/HanTrio_ExtractedFromCoriellCells_SmallVariants.vcf |
HG005 | BAM, VCF, reference scores | /data/ChineseTrio/HG005_NA24631_son/CompleteGenomics_normal_RMDNA/son_NA24631_GS000037265-ASM/ |
HG005 | Full package | /technical/complete_data/trios/native_format_data/GS000043894-DID/GS000037265-ASM/ |
GM24631 (cells) | BAM, VCF, reference scores | /data/ChineseTrio/HG005_NA24631_son/CompleteGenomics_normal_cellsDNA/son_NA24631_GS000037475-ASM/ |
GM24631 (cells) | Full package | /technical/complete_data/trios/native_format_data/GS000044335-DID/GS000037475-ASM/ |
GM24695 (cells) | BAM, VCF, reference scores | /data/ChineseTrio/HG007_NA24695-hu38168_mother/CompleteGenomics_normal_cellsDNA/mom_NA24695_GS000037477-ASM/ |
GM24695 (cells) | Full package | /technical/complete_data/trios/native_format_data/GS000044337-DID/GS000037477-ASM/ |
GM24694 (cells) | BAM, VCF, reference scores | /data/ChineseTrio/HG006_NA24694-huCA017E_father/CompleteGenomics_normal_cellsDNA/dad_NA24694_GS000037476-ASM/ |
GM24694 (cells) | Full package | /technical/complete_data/trios/native_format_data/GS000044336-DID/GS000037476-ASM/ |
