Table 10 Mapping rates of the reads and transcript assembly completeness.

From: De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris

 

PHA_leaf

fb_flower bud

L5_root

L6_stem

lip

column

sepal

petal

4_day seed

7_day seed

12_day seed

 

count

percentage

count

percentage

count

percentage

count

percentage

count

percentage

count

percentage

count

percentage

count

percentage

count

percentage

count

percentage

count

percentage

proper_pairs

10946586

86.99

50305282

88.42

30323300

85.32

41855338

85.83

42208656

92.89

44150392

93.78

45145406

94.75

46461164

93.72

45049842

94

42289318

86.36

30765662

94.1

CEGs

140

56.45

241

97.18

202

81.45

222

89.52

225

90.73

229

92.34

228

91.94

234

94.45

233

93.95

219

88.31

231

93.15

  1. The mapping rate was tested by Bowtie mapping reads back to the unigenes. This table shows only the numbers and percentages of proper pairs. Count indicates the number of reads mapping back to the unigenes, and percentage indicates the read percentage. The transcript assembly completeness was assessed using CEGMA: count indicates the number of the 248 ultra-conserved CEGs present in the transcript assemblies, and percentage indicates the percentage of the 248 ultra-conserved CEGs present.
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