Figure 5: Aggregate Pearson r² between imputed allele dosages and genotypes called from Illumina HumanOmniZhongHua Beadchip in 72 samples.

This figure shows the aggregate Pearson r² between imputed alternative allele dosages with genotypes called directly from 10x coverage sequencing data in nine samples. Each box contains data points for nine samples; the vertical axis shows aggregate Pearson r² of all SNPs in each alternative allele frequency bracket (horizontal axis) with concordant genotypes between that imputed alternative allele dosages and directly called from Illumina HumanOmniZhongHua Beadchip in 72 samples.