Table 1 16S rRNA gene sequence processing statistics and biosample accession numbers

From: Gut bacterial communities of diarrheic patients with indications of Clostridioides difficile infection

Sample name	Biosample accession	Raw reads (2x, paired-end)	After PEAR	% loss*	After QF	% loss *	After taxonomy filter	% loss *
patient_001	SAMN06011251	183,885	178,258	3.06	128,097	30.3	91,562	50.2
patient_002	SAMN06011252	283,254	272,331	3.86	208,965	26.2	189,871	33.0
patient_003	SAMN06011253	29,313	28,372	3.21	24,528	16.3	23,857	18.6
patient_004	SAMN06011254	19,854	18,967	4.47	16,185	18.5	14,889	25.0
patient_005	SAMN06011255	77,418	73,960	4.47	60,097	22.4	56,675	26.8
patient_006	SAMN06011256	118,110	112,829	4.47	92,535	21.7	73,601	37.7
patient_007	SAMN06011257	61,760	57,107	7.53	46,348	25.0	44,385	28.1
patient_008	SAMN06011258	188,584	183,121	2.90	160,489	14.9	151,302	19.8
patient_009	SAMN06011259	121,488	116,373	4.21	76,062	37.4	72,353	40.4
patient_010	SAMN06011260	47,754	45,826	4.04	38,386	19.6	36,312	24.0
patient_011	SAMN06011261	1,137,384	1,099,480	3.33	921,087	19.0	856,364	24.7
patient_012	SAMN06011262	29,601	28,353	4.22	23,893	19.3	20,824	29.7
patient_013	SAMN06011263	603,255	575,795	4.55	470,894	21.9	419,480	30.5
patient_014	SAMN06011264	27,890	26,906	3.53	22,664	18.7	21,306	23.6
patient_015	SAMN06011265	87,995	85,717	2.59	72,649	17.4	67,572	23.2
patient_016	SAMN06011266	81,374	77,871	4.30	65,934	19.0	56,602	30.4
patient_017	SAMN06011267	39,762	37,969	4.51	31,481	20.8	28,623	28.0
patient_018	SAMN06011268	69,262	66,730	3.66	25,195	63.6	23,399	66.2
patient_019	SAMN06011269	83,424	80,839	3.10	67,259	19.4	63,697	23.6
patient_020	SAMN06011270	108,817	104,597	3.88	89,081	18.1	85,928	21.0
patient_021	SAMN06011271	123,228	118,815	3.58	101,485	17.6	97,888	20.6
patient_022	SAMN06011272	27,398	26,520	3.20	21,818	20.4	19,523	28.7
patient_023	SAMN06011273	782,019	752,476	3.78	635,823	18.7	605,208	22.6
patient_024	SAMN06011274	570,482	548,037	3.93	466,962	18.1	450,550	21.0
patient_025	SAMN06011275	29,420	28,252	3.97	23,626	19.7	22,380	23.9
patient_026	SAMN06011276	58,090	55,621	4.25	26,390	54.6	24,952	57.0
patient_027	SAMN06011277	29,432	28,109	4.50	22,539	23.4	20,812	29.3
patient_028	SAMN06011278	181,138	173,803	4.05	140,608	22.4	126,714	30.0
patient_029	SAMN06011279	41,796	40,543	3.00	35,367	15.4	33,444	20.0
patient_030	SAMN06011280	45,345	43,748	3.52	30,554	32.6	28,364	37.4
patient_031	SAMN06011281	48,745	47,545	2.46	13,517	72.3	12,569	74.2
patient_032	SAMN06011282	50,655	48,039	5.16	21,797	57.0	20,248	60.0
patient_033	SAMN06011283	109,639	105,711	3.58	75,174	31.4	61,098	44.3
patient_034	SAMN06011284	19,449	18,806	3.31	16,053	17.5	14,558	25.1
patient_035	SAMN06011285	45,502	43,883	3.56	36,311	20.2	31,231	31.4
patient_036	SAMN06011286	112,545	107,687	4.32	80,577	28.4	78,582	30.2
patient_037	SAMN06011287	26,917	25,454	5.44	20,435	24.1	19,494	27.6
patient_038	SAMN06011288	43,597	42,515	2.48	34,868	20.0	33,540	23.1
patient_039	SAMN06011289	117,718	114,512	2.72	97,788	16.9	39,043	66.8
patient_040	SAMN06011290	73,905	69,618	5.80	54,943	25.7	52,717	28.7
patient_041	SAMN06011291	40,730	39,301	3.51	32,688	19.7	31,371	23.0
patient_042	SAMN06011292	38,409	37,155	3.26	31,748	17.3	29,962	22.0
patient_043	SAMN06011293	13,346	13,007	2.54	11,381	14.7	10,650	20.2
patient_044	SAMN06011294	16,592	15,995	3.60	13,586	18.1	13,207	20.4
patient_045	SAMN06011295	77,488	74,526	3.82	62,027	20.0	57,396	25.9
patient_046	SAMN06011296	66,527	64,443	3.13	51,997	21.8	50,861	23.5
patient_047	SAMN06011297	131,863	129,034	2.15	110,888	15.9	104,209	21.0
patient_048	SAMN06011298	27,782	27,214	2.04	22,383	19.4	22,103	20.4
patient_049	SAMN06011299	18,338	17,774	3.08	14,603	20.4	13,978	23.8
patient_050	SAMN06011300	47,408	46,252	2.44	39,412	16.9	36,086	23.9
patient_051	SAMN06011301	120,937	117,898	2.51	102,904	14.9	95,667	20.9
patient_052	SAMN06011302	59,282	57,527	2.96	49,677	16.2	47,377	20.1
patient_053	SAMN06011303	78,974	77,534	1.82	67,320	14.8	62,539	20.8
patient_054	SAMN06011304	35,543	34,385	3.26	28,947	18.6	24,646	30.7
patient_055	SAMN06011305	95,179	92,620	2.69	75,463	20.7	70,818	25.6
patient_056	SAMN06011306	27,168	26,425	2.73	22,551	17.0	21,338	21.5
patient_057	SAMN06011307	74,445	72,231	2.97	62,599	15.9	60,439	18.8
patient_058	SAMN06011308	329,680	317,312	3.75	268,820	18.5	257,896	21.8
patient_059	SAMN06011309	21,033	20,266	3.65	16,779	20.2	15,706	25.3
patient_060	SAMN06011310	432,732	421,277	2.65	352,201	18.6	336,711	22.2
patient_061	SAMN06011311	24,320	23,479	3.46	18,993	21.9	18,224	25.1
patient_062	SAMN06011312	38,558	35,981	6.68	28,868	25.1	27,283	29.2
patient_063	SAMN06011313	56,156	51,606	8.10	41,663	25.8	38,647	31.2
patient_064	SAMN06011314	46,732	44,780	4.18	34,617	25.9	33,399	28.5
patient_065	SAMN06011315	66,685	64,446	3.36	52,337	21.5	44,968	32.6
patient_066	SAMN06011316	133,075	128,615	3.35	100,317	24.6	98,069	26.3
patient_067	SAMN06011317	172,365	166,723	3.27	142,932	17.1	137,226	20.4
patient_068	SAMN06011318	70,140	68,535	2.29	59,169	15.6	55,802	20.4
patient_069	SAMN06011319	38,007	37,056	2.50	30,107	20.8	29,577	22.2
patient_070	SAMN06011320	13,530	13,126	2.99	11,143	17.6	10,443	22.8
patient_071	SAMN06011321	163,830	155,275	5.22	126,207	23.0	118,940	27.4
patient_072	SAMN06011322	82,488	79,151	4.05	64,796	21.4	59,576	27.8
patient_073	SAMN06011323	1,421,967	1,376,514	3.20	1,126,249	20.8	676,497	52.4
patient_074	SAMN06011324	122,784	117,609	4.21	96,116	21.7	86,400	29.6
patient_075	SAMN06011325	18,848	18,218	3.34	14,945	20.7	14,161	24.9
patient_076	SAMN06011326	34,771	33,688	3.11	27,875	19.8	26,132	24.8
patient_077	SAMN06011327	69,092	66,520	3.72	55,769	19.3	50,121	27.5
patient_078	SAMN06011328	113,883	111,135	2.41	98,305	13.7	92,503	18.8
patient_079	SAMN06011329	44,406	42,365	4.60	34,012	23.4	31,744	28.5

* calculated from raw reads.

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Table 1 16S rRNA gene sequence processing statistics and biosample accession numbers

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