Table 2 Metadata of patients
Sample name | C. difficile culture | Ribotype | Toxin PCR Ribotype | Toxin from stool (GDH) | C. difficile detection by NGS | Conformity of C. difficil e detection | Country | Gender | Age (y) | diarrhea | Concomitant diseases | Antibiotics last three months |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
patient_001 | positive | 27 | A+B+CDT+ | positive | positive | true | Germany | male | 75 | yes | none | yes |
patient_002 | positive | 001/072 | A+B+CDT− | positive | positive | true | Germany | female | 79 | yes | none | no |
patient_003 | negative | NA | NA | NA | negative | true | Germany | male | 87 | yes | none | yes |
patient_004 | negative | NA | NA | NA | positive | false | Germany | female | 93 | yes | none | yes |
patient_005 | negative | NA | NA | NA | negative | true | Germany | male | 75 | yes | none | yes |
patient_006 | negative | NA | NA | NA | positive | false | Germany | female | 62 | no | none | no |
patient_007 | negative | NA | NA | NA | negative | true | Germany | male | 49 | no | none | yes |
patient_008 | negative | NA | NA | NA | negative | true | Germany | male | 69 | yes | none | no |
patient_009 | positive | 001/072 | A+B+CDT− | negative | positive | true | Germany | male | 77 | yes | none | yes |
patient_010 | negative | NA | NA | NA | positive | false | Germany | female | 63 | yes | none | no |
patient_011 | negative | NA | NA | NA | negative | true | Germany | female | 64 | yes | none | no |
patient_012 | negative | NA | NA | NA | positive | false | Germany | female | 75 | no | none | no |
patient_013 | negative | NA | NA | NA | positive | false | Germany | female | 75 | no | none | no |
patient_014 | negative | NA | NA | NA | positive | false | Germany | female | 65 | no | none | no |
patient_015 | negative | NA | NA | NA | negative | true | Germany | male | 71 | no | none | yes |
patient_016 | negative | NA | NA | NA | positive | false | Germany | male | 79 | no | none | no |
patient_017 | negative | NA | NA | NA | positive | false | Germany | male | 56 | no | none | no |
patient_018 | positive | 001/072 | A+B+CDT− | negative | positive | true | Germany | male | 77 | yes | noro virus | yes |
patient_019 | negative | NA | NA | NA | positive | false | Germany | female | 31 | no | none | no |
patient_020 | positive | 78 | A+B+CDT+ | negative | positive | true | Germany | male | 57 | yes | noro virus | yes |
patient_021 | negative | NA | NA | NA | positive | false | Germany | male | 85 | yes | none | yes |
patient_022 | negative | NA | NA | NA | positive | false | Germany | male | 84 | no | none | yes |
patient_023 | positive | 78 | A+B+CDT+ | negative | positive | true | Germany | male | 57 | yes | noro virus | yes |
patient_024 | negative | NA | NA | NA | negative | true | Germany | male | 80 | yes | noro virus | yes |
patient_025 | positive | 78 | A+B+CDT+ | negative | positive | true | Germany | male | 59 | yes | none | yes |
patient_026 | positive | 001/072 | A+B+CDT− | negative | positive | true | Germany | male | 82 | yes | none | yes |
patient_027 | negative | NA | NA | NA | positive | false | Germany | female | 81 | no | none | NA |
patient_028 | negative | NA | NA | NA | negative | true | Germany | female | 72 | yes | none | yes |
patient_029 | positive | 2 | A+B+CDT− | positive | positive | true | Germany | male | 91 | yes | none | yes |
patient_030 | positive | 001/072 | A+B+CDT− | positive | positive | true | Germany | female | 84 | yes | none | yes |
patient_031 | positive | 78 | A+B+CDT+ | negative | negative | true | Germany | female | 85 | yes | noro virus | yes |
patient_032 | positive | 2 | A+B+CDT− | negative | positive | true | Germany | female | 70 | yes | none | yes |
patient_033 | positive | 001/072 | A+B+CDT− | negative | positive | true | Germany | male | 73 | yes | none | yes |
patient_034 | negative | NA | NA | NA | positive | false | Ghana | male | 45 | no | none | Amoxicillin |
patient_035 | negative | NA | NA | NA | negative | true | Ghana | male | 47 | yes | suspected cholera | no |
patient_036 | negative | NA | NA | NA | negative | true | Ghana | male | 9 | no | acute abdomen (suspected typhoid) | no |
patient_037 | positive | SLO 233 | A+B+CDT− | positive | positive | true | Ghana | female | 1.17 | no | ETEC/LT | Cloxacillin |
patient_038 | positive | 084 (CE) | A−B−CDT− | negative | positive | true | Ghana | female | 2 | no | ETEC/LT | Amoxicillin |
patient_039 | positive | SLO 095 | A−B−CDT− | negative | positive | true | Ghana | male | 72 | no | none | no |
patient_040 | positive | 011/049 | A−B−CDT− | negative | positive | true | Ghana | female | 30 | no | acute abdomen | no |
patient_041 | positive | SLO091 | A−B−CDT− | negative | positive | true | Ghana | male | 1.17 | yes | malaria, rota virus, ETEC/LT | no |
patient_042 | positive | 097 (CE) | A−B−CDT− | negative | negative | true | Ghana | female | 24 | no | none | Metronidazole, Ciprofloxacin |
patient_043 | positive | 084 (CE) | A−B−CDT− | negative | positive | true | Ghana | male | 5 | no | Giardia | no |
patient_044 | positive | SLO 235 | A−B−CDT− | negative | negative | true | Ghana | female | 0.67 | no | Shigella | no |
patient_045 | negative | NA | NA | NA | positive | false | Ghana | female | 34 | yes | none | no |
patient_046 | negative | NA | NA | NA | negative | true | Ghana | female | 1.42 | yes | malaria, chest infection | no |
patient_047 | negative | NA | NA | NA | positive | false | Ghana | male | 44 | yes | none | no |
patient_048 | negative | NA | NA | NA | positive | false | Ghana | female | 56 | yes | chest infection | Amoxicillin in the last 6 months |
patient_049 | negative | NA | NA | NA | positive | false | Ghana | male | 84 | yes | none | Metronidazole, Ampicillin |
patient_050 | negative | NA | NA | NA | positive | false | Ghana | male | 52 | no | none | Metronidazole in the last 6 months |
patient_051 | negative | NA | NA | NA | negative | true | Ghana | male | 78 | no | none | no |
patient_052 | negative | NA | NA | NA | negative | true | Ghana | female | 41 | no | none | no |
patient_053 | negative | NA | NA | NA | positive | false | Ghana | female | 28 | no | none | no |
patient_054 | negative | NA | NA | NA | negative | true | Ghana | female | 72 | no | none | no |
patient_055 | positive | SLO 233 | A+B+CDT− | positive | positive | true | Ghana | female | 22 | yes | Campylobacter | no |
patient_056 | positive | 084 (CE) | A−B−CDT− | negative | positive | true | Ghana | female | 40 | yes | none | Metronidazole |
patient_057 | positive | 084 (CE) | A−B−CDT− | negative | negative | true | Ghana | female | 1.33 | yes | malaria, Campylobacter | no |
patient_058 | negative | NA | NA | NA | positive | false | Indonesia | male | 3 | no | none | no |
patient_059 | negative | NA | NA | NA | positive | false | Indonesia | male | 13 | no | none | no |
patient_060 | negative | NA | NA | NA | positive | false | Indonesia | male | 65 | no | none | no |
patient_061 | negative | NA | NA | NA | negative | true | Indonesia | male | 12 | yes | none | no |
patient_062 | negative | NA | NA | NA | negative | true | Indonesia | female | 3 | yes | none | no |
patient_063 | negative | NA | NA | NA | negative | true | Indonesia | female | 20 | yes | none | no |
patient_064 | positive | 17 | A−B+CDT− | negative | positive | true | Indonesia | female | 56 | yes | none | no |
patient_065 | negative | NA | NA | NA | positive | false | Indonesia | male | 1 | yes | none | no |
patient_066 | negative | NA | NA | NA | negative | true | Indonesia | female | 70 | yes | none | no |
patient_067 | negative | NA | NA | NA | negative | true | Indonesia | female | 26 | yes | none | no |
patient_068 | negative | NA | NA | NA | positive | false | Indonesia | male | 46 | yes | none | no |
patient_069 | negative | NA | NA | NA | positive | false | Indonesia | female | 53 | yes | none | no |
patient_070 | positive | 53 | A+B+CDT− | negative | positive | true | Indonesia | male | 44 | no | none | no |
patient_071 | positive | SLO 236 | A+B+CDT− | positive | positive | true | Indonesia | female | 0.75 | no | none | no |
patient_072 | positive | SLO 160 | A+B+CDT− | negative | positive | true | Indonesia | female | 10 | yes | none | no |
patient_073 | positive | 10 | A−B−CDT− | negative | positive | true | Indonesia | male | 0.16 | yes | none | no |
patient_074 | negative | NA | NA | NA | positive | false | Indonesia | female | 11 | no | none | no |
patient_075 | negative | NA | NA | NA | positive | false | Indonesia | male | 100 | no | none | no |
patient_076 | negative | NA | NA | NA | positive | false | Indonesia | female | 85 | no | none | no |
patient_077 | negative | NA | NA | NA | positive | false | Indonesia | male | 67 | yes | none | no |
patient_078 | negative | NA | NA | NA | positive | false | Indonesia | female | 41 | no | none | no |
patient_079 | negative | NA | NA | NA | positive | false | Indonesia | female | 49 | no | none | no |
