Table 3 Summary statistics of the sequencing reads which aligned to the human genome (hg19) from each SMRT cell.
Run name | No. of reads | Coverage | Average aligning read length | Average mismatch frequency | Average indel frequency |
|---|---|---|---|---|---|
Run1 | 5,670 | 0.002 | 1171.04±9.63 | 0.742%±0.06% | 0.661%±0.035% |
Run2 | 5,204 | 0.002 | 1201.064±10.349 | 0.785%±0.073% | 0.761%±0.039% |
Run3 | 8,072 | 0.003 | 1176.594±8.123 | 0.744%±0.043% | 0.782%±0.034% |
Run4 | 9,900 | 0.003 | 845.664±5.383 | 2.486%±0.059% | 1.24%±0.035% |
Run5 | 10,852 | 0.005 | 1329.305±7.035 | 0.697%±0.044% | 0.862%±0.027% |
Run6 | 14,240 | 0.006 | 1270.59±6.149 | 0.652%±0.02% | 0.815%±0.026% |
Run7 | 34,868 | 0.011 | 968.521±3.475 | 0.85%±0.027% | 1.055%±0.018% |
Run8 | 33,830 | 0.010 | 929.996±3.417 | 0.976%±0.033% | 1.119%±0.02% |
Total | 122,636 | 0.040 | 1047.903±1.956 | 0.965%±0.015% | 0.994%±0.009% |
