Table 2 Comparisons between Suijing18 (SJ18) and the other datasets for representative assembled contigs publicly available and the annotated ncRNAs.
Subspecies | SJ18 Early-matured japonica/ Geng | IRGSP1.0 Medium-matured japonica/ Geng | R498 Indica/Xian Three-line hybrid restorer | ZS97RS1 Indica/Xian Three-line hybrid maintainer | MH63RS1 Indica/Xian Three-line hybrid restorer | HR-12 Indica/Xian | 9,311 Indica/Xian Two-line hybrid restorer | PA64S Indica/ Xian Two-line hybrid sterile line | IR64 Indica/Xian | DJ123 Aus type of indica/Xian |
|---|---|---|---|---|---|---|---|---|---|---|
Total nucleotides (Mb) | 418.9 | 373.2 | 390.3–423.2 | 346.9 | 359.9 | 389.8 | 374.6–466.0 | 382.0 | 316.3 | 321.2 |
N50 contig length (bp) | 2,467,626 | 7,711,345 | 1,185,206 | 2,339,070 | 3,097,358 | 28,500 | 6,690 | 17,000 | 22,200 | 25,500 |
Total genes | 38,456 | 39,045 | 38,714 | 34,610 | 37,324 | 56,284 | 40,745 | 37,162 | 37,768 | 37,812 |
tRNA | 434 | 244 | NA | 592 | 589 | NA | 734–993 | NA | NA | NA |
snoRNA | 681 | NA | NA | 449 | 457 | NA | NA | NA | NA | NA |
snRNA | 108 | NA | NA | 92 | 97 | NA | 3,374 | NA | NA | NA |
rRNA | 88 | 724 | NA | 40 | 60 | NA | 752 | NA | NA | NA |
miRNA | 173 | 146 | NA | 341 | 363 | NA | 3,806 | 1,155 | NA | NA |
