Table 2 Summary of contigs and unigenes.

From: De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments

 

Contig

Unigene

Total Length (bp)

6,66,34,674

4,08,14,856

Sequence Number

2,19,018

69,488

Max. Length (bp)

7,149

6,325

Mean Length (bp)

304.2

587.4

N50 (bp)

412

869

N50 Sequence No.

35,411

13,326

N90 (bp)

131

250

N90 Sequence No.

1,60,691

51,233

GC%

45.36

43.75

  1. Total Length (bp): the sum length of all contigs or unigenes. Sequence Number: the number of assembled contigs or unigenes. Max length: the length of longest contig or unigene. Mean length: the average length of contigs or unigenes. N50 (bp): arranging all sequences from longest to shortest, then adding the sequences with permutation. When the sum of the sequences reaches to 50% of total length, the length of last sequence is N50 (bp). N50 Sequence NO: the number of sequences longer than N50. N90 (bp): arranging all sequences from longest to shortest, then adding the sequences with permutation. When the sum of the sequences reaches to 90% of total length, the length of last sequence is N90 (bp). N90 Sequence NO: the number of sequences longer than N90. GC%: the percentage of GC in all bases.
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