Table 2 ISA-tab formatted table for the access of genome-wide DNA methylation and clinical-demographic data for each patient in the study
Sample Name | Source name | Characteristics[organism] | Characteristics[organism part] | Characteristics[sample type] | Method [Protocol 1] | Method [Protocol 2] | Method [Protocol 3] | Method [Protocol 4] | Method [Protocol 5] | Factor Value [Age at BM diagnosis (years)] | Factor Value [Gender] | Factor Value [Primary Cancer Origin] | Factor Value [BM Cancer Specific Subtypes] | Days to Last Follow-up or Death | Overall Survival Status | Assay Name | Raw or Derived Data File [IDAT file 1] | Raw or Derived Data File [IDAT file 2] | Data Repository | Data Record Accession [GEO Serie] | Data Record Accession |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BCBM-01 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 43 | Female | Breast Cancer | HER2 positive/HR any | 3179 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R06C02_Grn.idat | 200397860045_R06C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905348 |
BCBM-02 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 51 | Female | Breast Cancer | HER2 positive/HR any | 1296 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R01C01_Grn.idat | 200770460177_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905349 |
BCBM-03 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 52 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 6849 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R06C01_Grn.idat | 200123460166_R06C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905350 |
BCBM-04 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 52 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 6849 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R01C02_Grn.idat | 200123460166_R01C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905351 |
BCBM-05 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 53 | Female | Breast Cancer | HER2 positive/HR any | 1529 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R02C02_Grn.idat | 200397860045_R02C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905352 |
BCBM-06 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 62 | Female | Breast Cancer | HER2 positive/HR any | 5643 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R02C01_Grn.idat | 200770460177_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905353 |
BCBM-07 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 79 | Female | Breast Cancer | Triple Negative Breast Cancer | 1328 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R05C02_Grn.idat | 200397860045_R05C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905354 |
BCBM-08 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 50 | Female | Breast Cancer | HER2 positive/HR any | 4777 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R02C02_Grn.idat | 200123460166_R02C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905355 |
BCBM-09 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 73 | Female | Breast Cancer | Triple Negative Breast Cancer | 18240 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R03C02_Grn.idat | 200123460166_R03C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905356 |
BCBM-10 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 77 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 1324 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R01C01_Grn.idat | 200123460166_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905357 |
BCBM-11 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 40 | Female | Breast Cancer | Triple Negative Breast Cancer | 907 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R02C01_Grn.idat | 200123460166_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905358 |
BCBM-12 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 50 | Female | Breast Cancer | HER2 positive/HR any | 989 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460041_R02C01_Grn.idat | 200770460041_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905359 |
BCBM-13 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 56 | Female | Breast Cancer | Triple Negative Breast Cancer | 3724 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R03C01_Grn.idat | 200123460166_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905360 |
BCBM-14 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 44 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 2075 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R04C01_Grn.idat | 200123460166_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905361 |
BCBM-15 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 65 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 2511 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460166_R05C01_Grn.idat | 200123460166_R05C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905362 |
BCBM-16 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 72 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 2239 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460041_R01C01_Grn.idat | 200770460041_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905363 |
BCBM-17 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 40 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 1303 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460041_R03C01_Grn.idat | 200770460041_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905364 |
BCBM-19 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 53 | Female | Breast Cancer | HER2 positive/HR any | 1529 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R03C02_Grn.idat | 200397860045_R03C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905365 |
BCBM-20 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 57 | Female | Breast Cancer | HER2 positive/HR any | 1084 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R01C01_Grn.idat | 200770460180_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905366 |
BCBM-21 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 46 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 1905 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R02C01_Grn.idat | 200770460180_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905367 |
BCBM-22 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 69 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 4554 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R03C01_Grn.idat | 200770460180_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905368 |
BCBM-23 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 46 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 4357 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R04C01_Grn.idat | 200770460180_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905369 |
BCBM-24 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 71 | Female | Breast Cancer | HER2 positive/HR any | 4737 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R05C01_Grn.idat | 200770460180_R05C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905370 |
BCBM-25 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 67 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 5125 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R06C01_Grn.idat | 200770460180_R06C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905371 |
BCBM-26 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 57 | Female | Breast Cancer | Triple Negative Breast Cancer | 1883 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R01C02_Grn.idat | 200770460180_R01C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905372 |
BCBM-27 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 61 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 9131 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R02C02_Grn.idat | 200770460180_R02C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905373 |
BCBM-28 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 65 | Female | Breast Cancer | Hormone receptor positive/HER2 negative | 9131 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R03C02_Grn.idat | 200770460180_R03C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905374 |
BCBM-31 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 35 | Female | Breast Cancer | HER2 positive/HR any | N/A | N/A | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R06C02_Grn.idat | 200770460180_R06C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905375 |
BCBM-32 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 45 | Female | Breast Cancer | HER2 positive/HR any | N/A | N/A | Illumina Infinium 450K Human DNA methylation Beadchip | 201031670094_R04C01_Grn.idat | 201031670094_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905376 |
BCBM-33 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 40 | Female | Breast Cancer | HER2 positive/HR any | 935 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R03C01_Grn.idat | 200770460177_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905377 |
BM-01 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 58 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 1642 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R04C02_Grn.idat | 200770460180_R04C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905378 |
BM-02 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 68 | Female | Lung Cancer | Non-Small Cell Lung Cancer | N/A | N/A | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460180_R05C02_Grn.idat | 200770460180_R05C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905379 |
BM-03 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 80 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 1752 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R01C01_Grn.idat | 200866140110_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905380 |
BM-04 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 55 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 736 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R03C02_Grn.idat | 200770460177_R03C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905381 |
LCBM-01 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 62 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 1551 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R04C01_Grn.idat | 200770460177_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905382 |
LCBM-02 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 65 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 1074 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R05C01_Grn.idat | 200770460177_R05C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905383 |
LCBM-03 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 74 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 703 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R06C01_Grn.idat | 200770460177_R06C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905384 |
LCBM-04 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 71 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 137 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R01C02_Grn.idat | 200770460177_R01C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905385 |
LCBM-06 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 67 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 328 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R02C02_Grn.idat | 200770460177_R02C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905386 |
LCBM-08 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 66 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 18 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R04C02_Grn.idat | 200770460177_R04C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905387 |
LCBM-09 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 63 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 1146 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R05C02_Grn.idat | 200770460177_R05C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905388 |
LCBM-10 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 71 | Female | Lung Cancer | Small Cell Lung Cancer | 583 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200770460177_R06C02_Grn.idat | 200770460177_R06C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905389 |
LCBM-12 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 86 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 360 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R02C01_Grn.idat | 200866140110_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905390 |
LCBM-14 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 67 | Male | Lung Cancer | Small Cell Lung Cancer | 1050 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R03C01_Grn.idat | 200866140110_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905391 |
LCBM-15 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 88 | Male | Lung Cancer | Non-Small Cell Lung Cancer | 623 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R04C01_Grn.idat | 200866140110_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905392 |
LCBM-16 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 69 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 519 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R05C01_Grn.idat | 200866140110_R05C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905393 |
LCBM-17 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 64 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 129 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R06C01_Grn.idat | 200866140110_R06C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905394 |
LCBM-18 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 61 | Male | Lung Cancer | Non-Small Cell Lung Cancer | 277 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R01C02_Grn.idat | 200866140110_R01C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905395 |
LCBM-19 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 83 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 975 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R02C02_Grn.idat | 200866140110_R02C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905396 |
LCBM-20 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 43 | Male | Lung Cancer | Small Cell Lung Cancer | 315 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R03C02_Grn.idat | 200866140110_R03C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905397 |
LCBM-21 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 76 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 66 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R04C02_Grn.idat | 200866140110_R04C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905398 |
LCBM-22 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 68 | Female | Lung Cancer | Non-Small Cell Lung Cancer | 11 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R05C02_Grn.idat | 200866140110_R05C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905399 |
MBM-09 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 60 | Male | Melanoma | NRAS mutated | 2995 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7310440033_R04C01_Grn.idat | 7310440033_R04C01_Red.idat | Gene Expression Omnibus | GSE44661 | GSM1088546 |
MBM-10 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 63 | Female | Melanoma | BRAF/NRAS wild type | 5999 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7310440033_R05C01_Grn.idat | 7310440033_R05C01_Red.idat | Gene Expression Omnibus | GSE44661 | GSM1088547 |
MBM-11 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 80 | Male | Melanoma | N/A | 1461 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 7786915145_R06C02_Grn.idat | 7786915145_R06C02_Red.idat | Gene Expression Omnibus | GSE44661 | GSM1088548 |
MBM-12 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 44 | Male | Melanoma | NRAS mutated | 760 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7786923108_R02C01_Grn.idat | 7786923108_R02C01_Red.idat | Gene Expression Omnibus | GSE44661 | GSM1088549 |
MBM-14 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 62 | Male | Melanoma | BRAF mutated | 943 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7786923108_R04C01_Grn.idat | 7786923108_R04C01_Red.idat | Gene Expression Omnibus | GSE44661 | GSM1088551 |
MBM-15 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 45 | Female | Melanoma | NRAS mutated | 2404 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 7786923108_R05C01_Grn.idat | 7786923108_R05C01_Red.idat | Gene Expression Omnibus | GSE44661 | GSM1088552 |
MBM-16 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 48 | Female | Melanoma | BRAF mutated | 1232 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 7786923108_R06C01_Grn.idat | 7786923108_R06C01_Red.idat | Gene Expression Omnibus | GSE44661 | GSM1088553 |
MBM-17 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | NA | Female | Melanoma | BRAF mutated | 8187 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860098_R02C01_Grn.idat | 200397860098_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905400 |
MBM-18 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 75 | Female | Melanoma | NRAS mutated | 3881 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200123460092_R01C01_Grn.idat | 200123460092_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905401 |
MBM-19 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 56 | Male | Melanoma | BRAF mutated | 1185 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R05C01_Grn.idat | 200397860045_R05C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905402 |
MBM-20 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 70 | Female | Melanoma | BRAF/NRAS wild type | 3710 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860098_R05C01_Grn.idat | 200397860098_R05C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905403 |
MBM-21 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 56 | Female | Melanoma | BRAF/NRAS wild type | 2014 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200866140110_R06C02_Grn.idat | 200866140110_R06C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905404 |
MBM-22 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 53 | Male | Melanoma | NRAS mutated | 2684 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R05C01_Grn.idat | 200397540080_R05C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905405 |
MBM-23 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 73 | Male | Melanoma | NRAS mutated | 1187 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R06C02_Grn.idat | 200397540080_R06C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905406 |
MBM-24 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 71 | Male | Melanoma | NRAS mutated | 2252 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R03C01_Grn.idat | 200397860045_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905407 |
MBM-25 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 51 | Male | Melanoma | BRAF mutated | 3541 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R01C02_Grn.idat | 200397540080_R01C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905408 |
MBM-26 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 75 | Male | Melanoma | NRAS mutated | 2078 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860098_R03C02_Grn.idat | 200397860098_R03C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905409 |
MBM-27 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 82 | Male | Melanoma | BRAF mutated | 4217 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R04C02_Grn.idat | 200397540080_R04C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905410 |
MBM-28 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 47 | Male | Melanoma | BRAF mutated | 4867 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R03C02_Grn.idat | 200397540080_R03C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905411 |
MBM-29 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 74 | Male | Melanoma | NRAS mutated | 209 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 201031670094_R01C02_Grn.idat | 201031670094_R01C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905412 |
MBM-30 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 64 | Male | Melanoma | BRAF/NRAS wild type | 1296 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 201031670094_R02C02_Grn.idat | 201031670094_R02C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905413 |
MBM-31 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 72 | Male | Melanoma | NRAS mutated | 2465 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R04C01_Grn.idat | 200397860045_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905414 |
MBM-32 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 46 | Female | Melanoma | BRAF mutated | 3207 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R02C02_Grn.idat | 200397540080_R02C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905415 |
MBM-33 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 53 | Male | Melanoma | BRAF mutated | 654 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R01C02_Grn.idat | 200397860045_R01C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905416 |
MBM-34 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 55 | Male | Melanoma | NRAS mutated | 1152 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R06C01_Grn.idat | 200397860045_R06C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905417 |
MBM-35 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 62 | Male | Melanoma | BRAF mutated | 1000 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R01C01_Grn.idat | 200397540080_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905418 |
MBM-36 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 40 | Male | Melanoma | BRAF mutated | 6684 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R03C01_Grn.idat | 200397540080_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905419 |
MBM-37 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 58 | Male | Melanoma | NRAS mutated | 1383 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R06C01_Grn.idat | 200397540080_R06C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905420 |
MBM-38 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 49 | Female | Melanoma | BRAF mutated | 6658 | Alive | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R04C01_Grn.idat | 200397540080_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905421 |
MBM-39 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 64 | Male | Melanoma | BRAF mutated | 1713 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 9305216131_R06C02_Grn.idat | 9305216131_R06C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905422 |
MBM-40 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 55 | Male | Melanoma | NRAS mutated | 555 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R02C01_Grn.idat | 200397540080_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905423 |
MBM-41 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 62 | Female | Melanoma | NRAS mutated | 119 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397540080_R05C02_Grn.idat | 200397540080_R05C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905424 |
MBM-42 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 32 | Male | Melanoma | BRAF mutated | 5648 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 9305216131_R05C02_Grn.idat | 9305216131_R05C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905425 |
MBM-43 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 48 | Male | Melanoma | NRAS mutated | 1895 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860098_R05C02_Grn.idat | 200397860098_R05C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905426 |
MBM-44 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 72 | Male | Melanoma | BRAF mutated | 1810 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 9305216131_R04C02_Grn.idat | 9305216131_R04C02_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905427 |
MBM-45 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 42 | Female | Melanoma | BRAF mutated | 919 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R02C01_Grn.idat | 200397860045_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905428 |
MBM-46 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 80 | Male | Melanoma | BRAF mutated | 1716 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 8784241079_R04C01_Grn.idat | 8784241079_R04C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905429 |
MBM-47 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 59 | Male | Melanoma | BRAF mutated | 1271 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7800246021_R03C01_Grn.idat | 7800246021_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905430 |
MBM-48 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 56 | Female | Melanoma | NRAS mutated | 3471 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7310440033_R03C01_Grn.idat | 7310440033_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905431 |
MBM-49 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 54 | Male | Melanoma | NRAS mutated | 1926 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7800246020_R01C01_Grn.idat | 7800246020_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905432 |
MBM-50 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 44 | Male | Melanoma | BRAF mutated | 1688 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 200397860045_R01C01_Grn.idat | 200397860045_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905433 |
MBM-51 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 77 | Male | Melanoma | N/A | 514 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 8784241079_R03C01_Grn.idat | 8784241079_R03C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905434 |
MBM-52 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 73 | Male | Melanoma | BRAF/NRAS wild type | 904 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7800246021_R01C01_Grn.idat | 7800246021_R01C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905435 |
MBM-53 | Patient with brain metastasis | Homo sapiens | Brain metastasis | Microdissected formalin-fixed paraffin-embedded tissue | Tissue specimen collection | Histopathological classification of brain metastasis | Genomic DNA extraction | Genome-wide DNA methylation profiling | Data processing and analysis | 54 | Male | Melanoma | NRAS mutated | 3719 | Dead | Illumina Infinium 450K Human DNA methylation Beadchip | 7800246021_R02C01_Grn.idat | 7800246021_R02C01_Red.idat | Gene Expression Omnibus | GSE108576 | GSM2905436 |
