Table 1 Primers of 16 SNPs for MassARRAY identified from discovery stage.
Chr. | SNP | Location | Gene | Primer-EP | Primer-F | Primer-R |
|---|---|---|---|---|---|---|
1 | rs4658 | 43392250 | SLC2A1 | TCCAGGCCAGCAGAA | ACGTTGGATGAAAGCTTCTATCCCAGGAGG | ACGTTGGATGAATCCTAATGGAGCCTGACC |
2 | rs17730989 | 198362524 | HSPD1 | ACCATCAAGGCAAGTAG | ACGTTGGATGTATGTTGCGTGAACCTGGAA | ACGTTGGATGGTGACTTGTTTTAAAATCCG |
3 | rs2633851 | 4403817 | SUMF1 | GTGGACTGGGGAAGACT | ACGTTGGATGGCCCACTATGGACTGACAAC | ACGTTGGATGAGAAAAGCCCAATGTAGGTC |
4 | rs2231142 | 89052323 | ABCG2 | TTTAGAAGAGCTGCTGAGAACT | ACGTTGGATGTGATGTTGTGATGGGCACTC | ACGTTGGATGCGTCATAGTTGTTGCAAGCC |
5 | rs3776332 | 142441514 | ARHGAP26 | TTATGTCACATCTCATT GGTC | ACGTTGGATGCCCACAAGTGGCTCAGATAA | ACGTTGGATGTCCAGCACACTTTATGTCAC |
6 | rs28688207 | 32628660 | HLA-DQB1 | GAGGCCCTTGAGGTC | ACGTTGGATGAATATTACCTGCTGGTGGAG | ACGTTGGATGTGAGAGAGTGGCTGTTTGTG |
6 | rs462779 | 111695887 | REV3L | TTATTTTTTCATCCTTAAGTGTT | ACGTTGGATGACTTAACCTCAGCACCAGAC | ACGTTGGATGAATGAGAAAGGTACATCGAG |
7 | rs2070804 | 75933712 | HSPB1 | CCGAAACCTACACCAGTGTACCC | ACGTTGGATGCAGGAGTCATCTTTGCTCAG | ACGTTGGATGATGTGAGTCAGCCTGTGTCC |
8 | rs2977530 | 134215112 | WISP1 | CCTCTGAGTCAGCCA | ACGTTGGATGAGGTGTTGGGAAAAGAGGTG | ACGTTGGATGTCCCCACGCTTGTTTCAAAG |
8 | rs2929970 | 134241137 | WISP1 | AGGAAGATGGAGGTTTACC | ACGTTGGATGGCTTCAACCTCTTCAGCTTT | ACGTTGGATGTTCTGGTAGGAAGATGGAGG |
8 | rs2977549 | 134242033 | WISP1 | ATATTAAATGTCTCTTTTGCTAAG | ACGTTGGATGCATACATATGCATTTCTTTG | ACGTTGGATGCCAAAGCTACATGAAAATAG |
10 | rs2228528 | 50732280 | ERCC6 | CTTCAGCTCATAGTCAGTA | ACGTTGGATGAGGAAGATGACGAGGTGGAG | ACGTTGGATGGCAGAGGCTTCAGCTCATAG |
11 | rs228589 | 108093208 | NPAT | GGTCCAATAACCCTCC | ACGTTGGATGCTTGTATTGGGTAAGCGCGG | ACGTTGGATGTTTGGCCTCAAAGGTCCTTC |
11 | rs189037 | 108093833 | ATM | TCTCGCCTCCTCCCG | ACGTTGGATGGCTAACGGAGAAAAGAAGCC | ACGTTGGATGGTCAAAGTAGTATCAACCGC |
16 | rs3859104 | 55895249 | CES5A | TTCTATGTTCCAAATTCAAATAAATA | ACGTTGGATGCTTCGAACGGAGAGATGAAC | ACGTTGGATGCAAGTACCTCAATCCTCCTC |
17 | rs799917 | 41244936 | BRCA1 | AAGCGCCAGTCATTTGCTC | ACGTTGGATGAAGGTTTCAAAGCGCCAGTC | ACGTTGGATGAGAGTGGGCAGAGAATGTTG |
