Table 2 Metagenome sequencing statistics reported in this study.
From: Comparative shotgun metagenomic data of the silkworm Bombyx mori gut microbiome
Sample | MS1P50 | MS1QB |
|---|---|---|
Sequence size (Gbp) | 6.826 | 10.369 |
No. of reads | 45,505,084 | 69,127,002 |
Sequence strategy | Paired-end | Paired-end |
Library insert size | 500 | 500 |
Average read length | 150 | 150 |
No. of sequences removed by quality control procedures | 1,457,198 | 1,408,512 |
No. of sequences that passed quality control procedures | 44,047,886 | 67,718,490 |
Number of scaffolds ( >500 bps) after assembled | 91,037 | 44,201 |
Total Bases in scaffolds > 500 bps | 93,065,111 | 49,571,885 |
% of Sequences assembled | 93.50% | 98% |
No. of singletons after assembly | 0 | 0 |
N rate | 0% | 0% |
Largest scaffold length (bp) | 18,177 | 52,980 |
N50 scaffold length (bp) | 1,076 | 1,214 |
N90 scaffold length (bp) | 564 | 578 |
GC content | 53.91% | 54.49% |
ORFs ( >100 bps) | 148,685 | 75,232 |
Average ORF length (bp) | 546.7 | 576.3 |
