Table 1 Sequencing read alignment statistics for ChIP-seq and ChIP-exo.
From: ChIP-seq and ChIP-exo profiling of Pol II, H2A.Z, and H3K4me3 in human K562 cells
ChIP target | Antibody | Assay | Replicate | Sample ID | Total Mapped Reads | Uniquely Mapped Reads | Unique Mapping Rate |
|---|---|---|---|---|---|---|---|
Pol2 | sc899 (Santa Cruz) | ChIP-seq | 1 | SAMN07546015 | 28,247,807 | 24,603,174 | 87% |
| Â | Â | ChIP-seq | 2 | SAMN07546016 | 94,976,221 | 85,443,543 | 90% |
| Â | Â | TOTAL | Â | Â | 123,224,028 | 110,046,717 | Â |
| Â | Â | ChIP-exo | 1 | SAMN07546015 | 38,286,067 | 32,989,473 | 86% |
| Â | Â | ChIP-exo | 2 | SAMN07546016 | 56,147,982 | 50,109,500 | 89% |
| Â | Â | TOTAL | Â | Â | 94,434,049 | 83,098,973 | Â |
H2A.Z | 07-594 (EMD Milipore) | ChIP-seq | 1 | SAMN07546015 | 23,004,351 | 20,145,444 | 88% |
| Â | Â | ChIP-seq | 2 | SAMN07546016 | 35,928,019 | 32,559,626 | 91% |
| Â | Â | TOTAL | Â | Â | 58,932,370 | 52,705,070 | Â |
| Â | Â | ChIP-exo | 1 | SAMN07546015 | 27,043,543 | 23,726,092 | 88% |
| Â | Â | ChIP-exo | 2 | SAMN07546016 | 64,925,557 | 58,936,047 | 91% |
| Â | Â | TOTAL | Â | Â | 91,969,100 | 82,662,139 | Â |
H3K4me3 | ab8580 (Abcam) | ChIP-seq | 1 | SAMN07546015 | 57,472,144 | 52,954,309 | 92% |
| Â | Â | ChIP-seq | 2 | SAMN07546016 | 56,431,834 | 52,528,142 | 93% |
| Â | Â | TOTAL | Â | Â | 113,903,978 | 105,482,451 | Â |
| Â | Â | ChIP-exo | 1 | SAMN07546015 | 19,935,227 | 16,778,098 | 84% |
| Â | Â | ChIP-exo | 2 | SAMN07546016 | 52,325,622 | 47,444,745 | 91% |
| Â | Â | TOTAL | Â | Â | 72,260,849 | 64,222,843 | Â |
