Table 8 Results obtained with RepeatMasker for the cork oak draft genome.
Number of Elements | Length Occupied (bp) | Percentage of Sequence (%) | |
|---|---|---|---|
Retroelements | 96,642 | 72,329,781 | 7.59 |
SINEs: | 596 | 71,956 | 0.01 |
Penelope | 3 | 438 | 0.00 |
LINEs: | 24,465 | 12,440,942 | 1.31 |
CRE/SLACS | 35 | 1,803 | 0.00 |
L2/CR1/Rex | 0 | 0 | 0.00 |
R1/LOA/Jockey | 0 | 0 | 0.00 |
R2/R4/NeSL | 0 | 0 | 0.00 |
RTE/Bov-B | 2,551 | 734,240 | 0.08 |
L1/CIN4 | 21,858 | 11,703,615 | 1.23 |
LTR elements: | 71,581 | 59,816,883 | 6.27 |
BEL/Pao | 0 | 0 | 0.00 |
Ty1/Copia | 31,107 | 25,406,691 | 2.67 |
Gypsy/DIRS1 | 36,363 | 32,397,852 | 3.40 |
Retroviral | 0 | 0 | 0.00 |
DNA transposons | 32,632 | 7,066,773 | 0.74 |
Hobo-Activator | 12,038 | 3,473,326 | 0.36 |
Tc1-IS630-Pogo | 280 | 28,138 | 0.00 |
En-Spm | 0 | 0 | 0.00 |
MuDR-IS905 | 0 | 0 | 0.00 |
PiggyBac | 0 | 0 | 0.00 |
Tourist/Harbinger | 2,785 | 708,244 | 0.07 |
Other (Mirage P-element, P-element, Transib) | 0 | 0 | 0.00 |
Rolling-circles | 0 | 0 | 0.00 |
Unclassified | 4,448 | 1,927,308 | 0.20 |
Total interspersed repeats | 81,323,862 | 8.53 | |
Small RNA | 1,303 | 233,092 | 0.02 |
Satellites | 321 | 36,450 | 0.00 |
Simple repeats | 700,496 | 25,912,290 | 2.72 |
Low complexity | 127,202 | 6,580,532 | 0.69 |
