Table 2 Features of A. macleodii genomic islands
Associated to | Conserved | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
GI | Start | End | Number of genes (hp*) | GC content (%) | Inferred character | tRNA | IS* | AD45 | BS11 | 673 | AltDE | |
1 | 81222 | 101697 | 18 (4) | 43,66 | — | Arg | IN* | • | ||||
2 | 560941 | 589307 | 25 (6) | 41,96 | Putative Phage | IN | • | |||||
673 | 3 | 1088580 | 1116505 | 8 (1) | 46,40 | Giant Protein | Arg | • | ||||
4 | 1134251 | 1152135 | 17 (2) | 42,92 | Flagellum | • | • | • | • | |||
5 | 2082298 | 2121603 | 47 (25) | 46,54 | Phage Mu | Leu | IN | • | ||||
6 | 2343436 | 2359304 | 14 (1) | 41,57 | — | • | ||||||
7 | 3118782 | 3158982 | 36 (9) | 40,26 | LPS O-chain | • | • | • | • | |||
8 | 3609548 | 3637119 | 27 (1) | 45,15 | Benzoate degradation | Leu | • | |||||
9 | 3959983 | 3974610 | 9 (4) | 36,51 | — | • | ||||||
10 | 4008301 | 4030719 | 5 (1) | 45,46 | Giant Protein | • | ||||||
1 | 78181 | 106449 | 19 (3) | 44,61 | — | Arg | • | |||||
2 | 266279 | 322009 | 64 (12) | 42,12 | Metal resistance | Phe | IN | • | • | • | ||
BS11 | 3 | 1124500 | 1144989 | 16 (3) | 41,53 | Flagellum | • | • | • | • | ||
4 | 2279598 | 2304325 | 19 (3) | 41,23 | — | IN | • | |||||
5 | 2401542 | 2421598 | 29 (14) | 40,01 | — | TR* | • | |||||
6 | 2892357 | 2932344 | 52 (36) | 49,21 | Putative Phage | IN | • | |||||
7 | 3054010 | 3084688 | 27 (6) | 41,27 | LPS O-chain | • | • | • | • | |||
8 | 3507904 | 3530237 | 16 (4) | 44,37 | — | Leu | • | |||||
9 | 4330079 | 4370292 | 23(1) | 43,67 | Carbohydrates catabolism | • | ||||||
1 | 269912 | 303751 | 33 (6) | 40,43 | Metal resistance | Phe | IN | • | • | • | ||
2 | 879288 | 907000 | 15 (0) | 44,72 | Carbohydrates catabolism | • | ||||||
AD45 | 3 | 1019221 | 1042766 | 15 (1) | 44,12 | Alginate degradation | ||||||
4 | 1154028 | 1169709 | 12 (1) | 41,72 | Flagellum | • | • | • | • | |||
5 | 1721883 | 1783016 | 41 (18) | 39,98 | — | IN | • | |||||
6 | 2538511 | 2554138 | 30 (15) | 37,42 | — | • | ||||||
7 | 2649619 | 2670481 | 24 (4) | 41,40 | Mercury resistance | • | • | |||||
8 | 3170033 | 3215337 | 33 (4) | 41,09 | LPS O-chain | • | • | • | • | |||
9 | 3700399 | 3721824 | 14 (3) | 45,54 | — | • | ||||||
10 | 3846400 | 3867991 | 23 (13) | 40,39 | Putative Phage | IN | • | |||||
Deep-Surface* | A | 274551 | 311502 | 35 (3) | 45,11 | Chemotaxis | Phe | • | • | • | ||
B | 2712110 | 2734217 | 20 (3) | 44,56 | Carbohydrates catabolism | • | • | • | ||||
C | 3236155 | 3320545 | 21 (8) | 44,37 | — | • | • | • | ||||
D | 3675224 | 3704363 | 22 (2) | 45,74 | Alcohol catabolism | • | • | • | ||||
E | 4127396 | 4147382 | 19 (2) | 47,48 | Iron acquisition | • | • | • | ||||
F | 4238710 | 4330900 | 73 (10) | 46,18 | — | • | • | • | ||||
