Table 2 Number of identified SNVs and indels
From: A practical method to detect SNVs and indels from whole genome and exome sequencing data
Number | WGS | WES |
|---|---|---|
Total SNVs | 3,406,875 | 79,060 |
Total indels * | 763,944 (106,732) | 10,999 |
Total SNVs in splice sites | 105 | 56 |
Total SNVs in coding region | 20,314 | 19,861 |
Missense | 9,502 | 9,360 |
Nonsense | 109 | 83 |
Synonymous | 10,703 | 10,418 |
Total indels in coding region | 461 | 509 |
