Table 7 Result of the promoter search 200 nt upstream of the annotated start site for the genes detected as differentially expressed by the sliding window method. Box A (AAT) and box B (GCAA) are shown in bold
From: Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response
Upstream distance | Spacer | Sequence | Gene | Start site | Fold change (log2) | Probability (differentially regulated) | Strand |
|---|---|---|---|---|---|---|---|
81 | 6 | AATGGAAAAGCAA | csrD | 3401354 | −0.85 | 1.00 | − |
178 | 6 | AATACTAAAGCAA | yiiX | 4125917 | −0.73 | 1.00 | − |
101 | 6 | AATAGTTGCGCAA | fxsA | 4366687 | −1.57 | 1.00 | + |
64 | 6 | AATTCCTATGCAA | spf | 4047922 | −1.51 | 0.99 | + |
16 | 6 | AATTAAGATGCAA | hmp | 2683857 | +1.09 | 1.00 | + |
97 | 6 | AATATTTGCGCAA | iraP | 400610 | +0.67 | 0.97 | + |
66 | 6 | AATTAAAGCGCAA | ada | 2308427 | +1.76 | 1.00 | − |
53 | 6 | AATATGAAAGCAA | alkA | 2145564 | +2.72 | 1.00 | − |
