Table 2 Signatures of recent positive selection*

From: Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya

Chromosome

Position

frequency

Allele

Gene

iHS

MAL1

180291

0.130

A

PFA0205w

3.941

MAL1

180421

0.717

A

PFA0205w

5.118

MAL1

192889

0.217

G

PFA0220w

3.652

MAL2

839683

0.152

A

PFB0935w

3.669

MAL3

137202

0.870

A

PFC0120w

4.850

MAL3

884959

0.109

A

PFC0935c

4.843

MAL3

884962

0.109

A

PFC0935c

4.844

MAL4

545613

0.109

G

PFD0595w

3.611

MAL4

611365

0.717

G

-

3.810

MAL4

805223

0.065

G

PFD0872w

3.763

MAL4

994422

0.065

C

PFD1030c

3.982

MAL4

1148234

0.630

A

PFD1215w

3.958

MAL4

1148261

0.522

A

PFD1215w

3.692

MAL5

929750

0.457

G

PFE1120w

3.621

MAL5

1011110

0.391

C

PFE1210c

3.799

MAL6

1030822

0.304

G

PFF1225c

3.677

MAL6

1114493

0.500

A

-

4.840

MAL6

1114518

0.543

A

-

4.154

MAL6

1114565

0.565

G

PFF1350c

3.973

MAL6

1114588

0.543

A

PFF1350c

4.201

MAL6

1114626

0.543

A

PFF1350c

4.201

MAL6

1114909

0.543

C

PFF1350c

4.201

MAL6

1114929

0.543

A

PFF1350c

4.201

MAL6

1114952

0.543

C

PFF1350c

4.201

MAL6

1115373

0.565

G

PFF1350c

4.846

MAL6

1115454

0.587

A

PFF1350c

4.802

MAL6

1116047

0.609

T

PFF1350c

4.853

MAL6

1116102

0.587

T

PFF1350c

4.786

MAL6

1116171

0.609

A

PFF1350c

4.730

MAL6

1116315

0.587

T

PFF1350c

4.821

MAL6

1117520

0.609

A

PFF1350c

3.786

MAL6

1128749

0.543

G

PFF1365c

4.064

MAL6

1132351

0.500

G

PFF1365c

3.959

MAL6

1268976

0.348

C

PFF1470c

4.036

MAL6

1271588

0.217

T

-

4.432

MAL6

1282898

0.196

T

PFF1485w

4.929

MAL6

1283740

0.087

T

-

4.064

MAL7

430849

0.391

T

PF07_0028

3.763

MAL7

431906

0.326

C

PF07_0028

3.860

MAL7

465618

0.870

C

PF07_0035

3.716

MAL7

465787

0.478

C

PF07_0035

6.267

MAL7

465791

0.543

A

PF07_0035

4.825

MAL7

465810

0.587

T

PF07_0035

4.109

MAL7

466389

0.261

T

PF07_0035

3.963

MAL7

466988

0.457

T

PF07_0035

4.196

MAL7

467844

0.370

A

PF07_0036

4.568

MAL7

476798

0.370

G

PF07_0037

3.732

MAL7

503466

0.717

G

MAL7P1.30

3.850

MAL7

520886

0.109

A

PF07_0042

3.626

MAL7

524323

0.065

T

PF07_0042

4.668

MAL7

665933

0.152

C

-

3.713

MAL7

761532

0.087

G

PF07_0066

4.206

MAL7

1440395

0.370

C

-

4.991

MAL8

469790

0.304

T

PF08_0102

3.840

MAL8

479954

0.174

C

-

3.632

MAL8

491667

0.239

A

MAL8P1.113

5.274

MAL8

491757

0.217

C

MAL8P1.113

5.665

MAL8

491831

0.217

G

MAL8P1.113

5.853

MAL8

491883

0.217

C

MAL8P1.113

5.856

MAL8

492065

0.587

T

MAL8P1.113

4.366

MAL8

502511

0.304

A

PF08_0100

4.319

MAL8

506087

0.283

T

MAL8P1.112

4.061

MAL9

599641

0.087

G

PFI0685w

3.867

MAL9

689167

0.891

A

PFI0805w

4.711

MAL9

1202400

0.065

T

PFI1475w

3.920

MAL9

1202416

0.065

A

PFI1475w

3.920

MAL9

1202437

0.065

T

PFI1475w

3.920

MAL9

1202504

0.065

C

PFI1475w

3.921

MAL10

61593

0.304

A

-

4.516

MAL10

68880

0.065

C

PF10_0015

3.600

MAL10

68888

0.065

A

PF10_0015

3.660

MAL10

879301

0.065

G

PF10_0211

3.873

MAL10

1524131

0.522

A

PF10_0374

3.784

MAL10

1524172

0.370

T

PF10_0374

3.862

MAL10

1543093

0.478

A

PF10_0374

4.313

MAL11

265298

0.065

T

PF11_0074

4.526

MAL11

681352

0.717

G

PF11_0185

4.136

MAL11

681360

0.739

G

PF11_0185

4.185

MAL11

1294582

0.261

A

PF11_0344

6.442

MAL11

1294701

0.348

C

PF11_0344

4.887

MAL11

1294706

0.217

C

PF11_0344

6.074

MAL11

1294751

0.370

A

PF11_0344

4.403

MAL11

1637771

0.087

T

PF11_0420

3.604

MAL12

57132

0.109

G

-

5.100

MAL12

57138

0.152

T

-

4.183

MAL12

95229

0.152

A

PFL0070c

3.764

MAL12

1579059

0.196

G

PFL1835w

4.093

MAL13

1465418

0.152

C

PF13_0201

4.118

MAL13

1465808

0.130

C

PF13_0201

3.624

MAL13

1465878

0.478

C

PF13_0201

4.519

MAL13

1465929

0.543

C

PF13_0201

4.213

MAL13

1465950

0.478

G

PF13_0201

3.931

MAL13

1466282

0.804

C

PF13_0201

3.900

MAL13

1466322

0.370

C

PF13_0201

4.446

MAL13

1466429

0.913

T

PF13_0201

4.973

MAL13

1466471

0.283

A

PF13_0201

3.921

MAL14

542167

0.087

A

PF14_0135

4.274

MAL14

1986848

0.891

T

PF14_0463

3.759

MAL14

1986850

0.913

T

PF14_0463

3.984

MAL14

3121318

0.348

T

PF14_0726

3.625

MAL14

3121371

0.261

C

-

4.836

MAL14

3121449

0.174

G

PF14_0726

5.866

  1. *using the integrated haplotype score (iHS, absolute values >3.6 are presented).
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