Table 2 Core microbiota. Columns describe taxonomic ranks of core OTUs97 of each fraction among all samples. Asterisks indicate families found in at least 5 out of 6 samples
Fraction | Phylum | Class | Order | Family |
|---|---|---|---|---|
FS | Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | |
Ruminococcaceae | ||||
ud-Clostridiales | ||||
Bacilli | Lactobacillales | Streptococcaceae* | ||
ud-Bacteria | ud-Bacteria | ud-Bacteria | ud-Bacteria | |
Act | Actinobacteria | Actinobacteria | Actinomycetales | Microbacteriaceae* |
Nocardiaceae* | ||||
Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | |
Proteobacteria | Alphaproteobacteria | Sphingomonadales | Erythrobacteraceae | |
Sphingomonadaceae | ||||
ud-Sphingomonadales | ||||
Betaproteobacteria | Burkholderiales | Comamonadaceae | ||
Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | ||
Xanthomonadales | Xanthomonadaceae* | |||
Firmicutes | Clostridia | Clostridiales | Ruminococcaceae* | |
Lachnospiraceae | ||||
ud-Clostridiales | ||||
Bacilli | Lactobacillales | Streptococcaceae* | ||
IgA | Actinobacteria | Actinobacteria | Actinomycetales | Nocardiaceae |
Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | |
Proteobacteria | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | |
ud-Sphingomonadales | ||||
Betaproteobacteria | Burkholderiales | Comamonadaceae | ||
Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | ||
Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | |
Clostridia | Clostridiales | Ruminococcaceae | ||
Lachnospiraceae | ||||
Bacilli | Lactobacillales | Streptococcaceae* |
