Table 3 Amplification of genes within the 12q13.3–14.1 region
From: Aberrant CDK4 Amplification in Refractory Rhabdomyosarcoma as Identified by Genomic Profiling
CytoBand | Start | Stop | Genes | Description | Logratio | Amplification |
|---|---|---|---|---|---|---|
q13.3 | 57113710 | 57113768 | NACA | nascent polypeptide-associated complex alpha subunit | 3.08714845 | 1.9722129 |
q13.3 | 57163276 | 57163335 | HSD17B6 | hydroxysteroid (17-beta) dehydrogenase 6 homolog | 2.4834826 | 1.9722129 |
q13.3 | 57320705 | 57320764 | SDR9C7 | short chain dehydrogenase/reductase family 9C, member 7 | 4.02499225 | 3.5578115 |
q13.3 | 57346683 | 57346741 | RDH16 | retinol dehydrogenase 16 | 3.5232894 | 3.5578115 |
q13.3 | 57388559 | 57388616 | GPR182 | G protein-coupled receptor 182 | 4.0685396 | 3.5578115 |
q13.3 | 57393071 | 57393130 | ZBTB39 | zinc finger and BTB domain containing 39 | 4.8680987 | 3.5578115 |
q13.3 | 57407139 | 57407192 | TAC3 | tachykinin 3 | 3.0193808 | 3.5578115 |
q13.3 | 57434942 | 57435000 | MYO1A | myosin IA | 3.6858533 | 3.5578115 |
q13.3 | 57485677 | 57485731 | NAB2 | NGFI-A binding protein 2 (EGR1 binding protein 2) | 3.68784485 | 3.5578115 |
q13.3 | 57494332 | 57494389 | STAT6 | signal transducer and activator of transcription 6, interleukin-4 induced | 3.0424881 | 3.5578115 |
q13.3 | 57536486 | 57536545 | LRP1 | low density lipoprotein receptor-related protein 1 | 3.46636355 | 3.5578115 |
q13.3 | 57627832 | 57627881 | SHMT2 | serine hydroxymethyltransferase 2 | 1.191406 | 1.9722129 |
q13.3 | 57631500 | 57631556 | NDUFA4L2 | NADH dehydrogenase | 1.3683021 | 1.9722129 |
q13.3 | 57640585 | 57640634 | STAC3 | SH3 and cysteine rich domain 3 | 0.29862076 | 0.3607726 |
q13.3 | 57648401 | 57648459 | R3HDM2 | R3H domain containing 2 | 0.1239139 | 0.3607726 |
q13.3 | 57836402 | 57836461 | INHBC | inhibin, beta C | −0.1627071 | 0.3607726 |
q13.3 | 57851519 | 57851578 | INHBE | inhibin, beta E | 0.14920259 | 0.3607726 |
q13.3 | 57856767 | 57856826 | GLI1 | GLI family zinc finger 1 | 1.0021597 | 0.3607726 |
q13.3 | 57866181 | 57866240 | ARHGAP9 | Rho GTPase activating protein 9 | 0.52336573 | 0.3607726 |
q13.3 | 57882471 | 57882530 | MARS | methionyl-tRNA synthetase | 0.62351316 | 0.3607726 |
q13.3 | 57911186 | 57911234 | DDIT3 | DNA-damage-inducible transcript 3 | 0.1061752 | 0.3607726 |
q13.3 | 57933393 | 57933452 | DCTN2 | dynactin 2 (p50) | 0.8863068 | 0.3607726 |
q13.3 | 57948906 | 57948965 | KIF5A | kinesin family member 5A | 0.40449824 | 0.3607726 |
q13.3 | 57988882 | 57988939 | PIP4K2C | phosphatidylinositol-5-phosphate 4-kinase, type II, gamma | 0.23406802 | 0.3607726 |
q13.3 | 58000377 | 58000436 | DTX3 | deltex homolog 3 (Drosophila) | 0.07017814 | 0.3607726 |
q13.3 | 58009250 | 58009302 | GEFT | RhoA/RAC/CDC42 exchange factor | 0.29716232 | 0.3607726 |
q13.3 | 58018895 | 58018942 | SLC26A10 | solute carrier family 26, member 10 | 0.89334315 | 0.3607726 |
q13.3 | 58025318 | 58025372 | B4GALNT1 | beta-1,4-N-acetyl-galactosaminyl transferase 1 | 0.54608015 | 0.3607726 |
q14.1 | 58110202 | 58110247 | OS9 | osteosarcoma amplified 9, endoplasmic reticulum lectin | 2.8875618 | 3.2700999 |
q14.1 | 58118971 | 58119026 | AGAP2 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 | 3.2052916 | 3.2700999 |
q14.1 | 58139960 | 58140017 | TSPAN31 | tetraspanin 31 | 2.3439372 | 3.2700999 |
q14.1 | 58143212 | 58143260 | CDK4 | cyclin-dependent kinase 4 | 3.8085285 | 3.2700999 |
q14.1 | 58163728 | 58163784 | METTL1 | methyltransferase like 1 | 3.1829998 | 3.2700999 |
q14.1 | 58167136 | 58167187 | FAM119B | family with sequence similarity 119, member B | 3.5654607 | 3.2700999 |
q14.1 | 58186836 | 58186894 | TSFM | Ts translation elongation factor, mitochondrial | 3.2734551 | 3.2700999 |
q14.1 | 58205712 | 58205771 | AVIL | advillin | 3.2119691 | 3.2700999 |
