Table 1 Genome characteristics of Harpophora oryzae R5-6-1
Genome features | Harpophora oryzae |
|---|---|
Assembly size (Mb) | 50.78 |
Scaffold number | 247 |
N50 scaffold (kb) | 755 |
N90 scaffold (kb) | 220 |
GC-content (%) | 56.6 |
Protein coding genes | 14575 |
Mean transcript length (bp) | 1651 |
Number of exons | 41478 |
Average exon length (bp) | 519 |
Number of Introns | 26117 |
Average intron length (bp) | 137 |
Mean number of introns/gene | 1.7 |
Mean number of extrons/gene | 2.8 |
Percentage coding (%) | 42 |
Gene density (number of genes per Mb) | 287 |
tRNA genes | 243 |
Repetitive DNA (%) | 14.97 |
Secreted proteins (SP) | 2287 |
Small secreted cysteine-rich proteins (SSCRPs) | 167 |
