Table 1 The information of the organisms used in the current study
From: Protein Localization Analysis of Essential Genes in Prokaryotes
Organism | Group a | RefSeq | Dataset of essential gene b | Dataset of non-essential gene b | Source c |
|---|---|---|---|---|---|
Acinetobacter baylyi ADP1 | Bacteria (−) | NC_005966 | 499, 90.38%, 2.81% | 2594, 76.21%, 2.08% | I |
Bacillus subtilis 168 | Bacteria (+) | NC_000964 | 271, 94.83%, 1.48% | 3955, 81.85%, 1.29% | II |
Bacteroides thetaiotaomicron VPI-5482 | Bacteria (−) | NC_004663 | 325, 84.62%, 5.23% | 4453, 65.10%, 5.19% | II |
Burkholderia thailandensis E264 | Bacteria (−) | NC_007650 | 42, 84.73%, 4.93% | 2314, 70.65%, 3.23% | II |
|  | Bacteria (−) | NC_007651 | 364, 84.73%, 4.93% | 2912, 70.65%, 3.23% | II |
Campylobacter jejuni NCTC 11168 | Bacteria (−) | NC_002163 | 228, 76.75%, 3.07% | 1395, 80.43%, 2.94% | II |
Caulobacter crescentus NA1000 | Bacteria (−) | NC_011916 | 480, 83.96%, 4.79% | 3224, 63.31%, 3.97% | I |
Escherichia coli MG1655 | Bacteria (−) | NC_000913 | 609, 80.13%, 2.79% | 2923, 82.18%, 2.39% | I |
Francisella novicida U112 | Bacteria (−) | NC_008601 | 392, 87.76%, 3.83% | 1329, 76.98%, 3.01% | II |
Haemophilus influenzae Rd KW20 | Bacteria (−) | NC_000907 | 642, 87.07%, 1.25% | 512, 87.11%, 1.95% | I |
Helicobacter pylori 26695 | Bacteria (−) | NC_000915 | 323, 76.47%, 2.48% | 1135, 76.83%, 4.58% | I |
Methanococcus maripaludis S2 | Archaeon | NC_005791 | 519, 92.49%, 0.39% | 1077, 86.72%, 0.09% | I |
Mycobacterium tuberculosis H37Rv | Bacteria (−) | NC_000962 | 687, 85.01%, 3.78% | 3070, 61.34%, 2.31% | I |
Mycoplasma genitalium G37 | Mycoplasmas | NC_000908 | 381, 78.48%, 0.52% | 94, 67.02%, 0.00% | I |
Mycoplasma pulmonis UAB CTIP | Mycoplasmas | NC_002771 | 310, 80.00%, 0.65% | 322, 60.25%, 0.62% | I |
Porphyromonas gingivalis ATCC 33277 | Bacteria (−) | NC_010729 | 463, 87.26%, 1.94% | 1627, 62.81%, 3.01% | II |
Pseudomonas aeruginosa PAO1 | Bacteria (−) | NC_002516 | 117, 85.47%, 1.71% | 5454, 76.88%, 3.04% | II |
Pseudomonas aeruginosa UCBPP-PA14 | Bacteria (−) | NC_008463 | 335, 79.10%, 1.79% | 960, 65.83%, 1.98% | I |
Salmonella enterica serovar Typhi Ty2 | Bacteria (−) | NC_004631 | 358, 90.78%, 2.79% | 3906, 73.35%, 2.18% | I |
Salmonella enterica serovar Typhimurium SL1344 | Bacteria (−) | NC_016810 | 353, 88.67%, 2.55% | 4035, 74.65%, 2.55% | I |
Salmonella enterica serovar Typhimurium 14028S | Bacteria (−) | NC_016856 | 105, 90.48%, 1.90% | 5210, 63.88%, 2.13% | II |
Salmonella typhimurium LT2 | Bacteria (−) | NC_003197 | 230, 87.83%, 3.91% | 4228, 74.83%, 2.46% | II |
Shewanella oneidensis MR-1 | Bacteria (−) | NC_004347 | 402, 88.81%, 3.48% | 1103, 86.49%, 3.45% | I |
Sphingomonas wittichii RW1 | Bacteria (−) | NC_009511 | 535, 76.26%, 2.80% | 4315, 72.28%, 4.47% | II |
Staphylococcus aureus N315 | Bacteria (+) | NC_002745 | 302, 95.03%, 0.66% | 2281, 80.45%, 1.18% | II |
Staphylococcus aureus NCTC 8325 | Bacteria (+) | NC_007795 | 351, 90.03%, 1.99% | 2541, 76.62%, 0.87% | II |
Streptococcus sanguinis SK36 | Bacteria (+) | NC_009009 | 218, 94.50%, 0.46% | 2052, 82.36%, 1.17% | I |
Vibrio cholerae N16961 | Bacteria (−) | NC_002505 | 565, 56.87%, 1.41% | 2105, 78.05%, 2.89% | II |
|  | Bacteria (−) | NC_002506 | 214, 56.87%, 1.41% | 838, 78.05%, 2.89% | II |
