Table 2 Phylogenetic patterns of gene distribution in selected Proteobacteria. Values were calculated for the 1000 partitions of the species phylogenetic tree
Gene a | D b | P(D > 0) c | P(D < 1) c | Phylogenetic signal strength |
|---|---|---|---|---|
pqqB | 0.05 (0.01/0.07) | 0.16/0.41 | 0 | Strong |
pqqC | 0.04 (0.00/0.07) | 0.16/0.45 | 0 | Strong |
pqqD | 0.04 (0.00/0.07) | 0.16/0.45 | 0 | Strong |
pqqE | 0.04 (0.01/0.07) | 0.17/0.45 | 0 | Strong |
pqqF | −0.17 (−0.20/−0.15) | 0.95/0.99 | 0 | Very strong |
pqqG | −0.18 (−0.21/−0.17) | 0.95/0.98 | 0 | Very strong |
phlA | −0.40 (−0.76/−0.06) | 0.48/0.88 | 0.00/0.04 | Very strong |
phlB | −0.40 (−0.75/−0.05) | 0.49/0.89 | 0.00/0.04 | Very strong |
phlC | −0.40 (−0.75/−0.06) | 0.48/0.88 | 0.00/0.03 | Very strong |
phlD | −0.24 (−0.36/−0.12) | 0.63/0.86 | 0 | Very strong |
hcnA | −0.18 (−0.30/−0.06) | 0.62/0.95 | 0 | Strong |
hcnB | −0.18 (−0.30/−0.05) | 0.61/0.95 | 0 | Strong |
hcnC | −0.18 (−0.29/−0.06) | 0.61/0.94 | 0 | Strong |
budA | −0.34 (−0.37/−0.30) | 0.98/0.99 | 0 | Very strong |
budB | −0.34 (−0.37/−0.30) | 0.98/0.99 | 0 | Very strong |
budC | −0.02 (−0.08/−0.03) | 0.40/0.70 | 0 | Strong |
nirK | −0.05 (−0.09/−0.02) | 0.60/0.89 | 0 | Very strong |
ipdC | −0.33 (−0.41/0.28) | 0.96/0.99 | 0 | Very strong |
ppdC | −0.34 (−0.27/−0.47) | 0.65/0.80 | 0 | Very strong |
acdS | 0.10 (0.07/0.13) | 0.05/0.19 | 0 | Moderate |
nifD | 0.28 (0.23/0.33) | 0.01/0.05 | 0 | Weak |
nifH | 0.28 (0.24/0.33) | 0.00/0.04 | 0 | Weak |
nifK | 0.28 (0.23/0.33) | 0.00/0.04 | 0 | Weak |
