Table 3 Genotype and minor allele frequencies of 30 SNPs in 7 genes in 925 controls
Gene | SNP | Allele (A/a) | Variation (amino acid) | AA | Aa | aa | MAF | P (HWE) | Genotyping Assay ID |
|---|---|---|---|---|---|---|---|---|---|
CLOCK | rs34897046 | C/G | S/C | 1 | 0 | 0 | 0 | 1 | C__25595098_10 |
rs6855837 | C/A | L/I | 1 | 0 | 0 | 0 | 1 | C__29101689_10 | |
rs3762836 | A/G | H/R | 0.981 | 0.019 | 0 | 0.01 | 1 | C__27479322_10 | |
rs1801260 | T/C | 0.707 | 0.268 | 0.025 | 0.159 | 1 | C___8746719_20 | ||
CRY2 | rs2863712 | T/G | W/G | 1 | 0 | 0 | 0 | 1 | C__16079564_10 |
NPAS2 | rs34628006 | A/G | T/A | 1 | 0 | 0 | 0 | 1 | C__25757964_10 |
rs2305160 | G/A | A/T | 0.659 | 0.297 | 0.043 | 0.192 | 0.243 | C__15976652_10 | |
rs11541353 | C/T | S/L | 1 | 0 | 0 | 0 | 1 | C___2153849_10 | |
rs58728948 | G/A | A/T | 1 | 0 | 0 | 0 | 1 | C__25757546_10 | |
PER1 | rs2585405 | C/G | P/A | 0.345 | 0.477 | 0.178 | 0.417 | 0.592 | C__16260899_10 |
rs3027193 | G/A | R/H | 1 | 0 | 0 | 0 | 1 | C__15770159_10 | |
PER2 | rs2304672 | C/G | 0.893 | 0.106 | 0.001 | 0.054 | 0.472 | C___2129919_1_ | |
rs35572922 | G/T | A/S | 1 | 0 | 0 | 0 | 1 | C__25973284_20 | |
rs4429421 | G/A | V/I | 0.991 | 0.009 | 0 | 0.004 | 1 | C__27970170_10 | |
rs35333999 | G/A | V/I | 1 | 0 | 0 | 0 | 1 | C__25992030_10 | |
rs35998480 | T/A | F/Y | 1 | 0 | 0 | 0 | 1 | C__25958587_10 | |
rs934945 | G/A | G/E | 0.476 | 0.428 | 0.096 | 0.31 | 1 | C___8740718_20 | |
PER3 | rs10462020 | T/G | V/G | 0.928 | 0.07 | 0.002 | 0.037 | 0.731 | C__25956444_10 |
rs35687686 | C/T | R/W | 1 | 0 | 0 | 0 | 1 | C__25970031_10 | |
rs228696 | C/T | L/P | 1 | 0 | 0 | 0 | 1 | C_____10225_10 | |
rs35899625 | T/G | L/W | 1 | 0 | 0 | 0 | 1 | C__25967284_10 | |
rs228697 | C/G | P/A | 0.846 | 0.149 | 0.004 | 0.079 | 0.606 | C_____10224_10 | |
rs2640909 | T/C | M/T | 0.782 | 0.204 | 0.014 | 0.116 | 0.96 | ||
rs2640905 | C/G | S/C | 1 | 0 | 0 | 0 | 1 | C__16268919_10 | |
rs35802556 | C/T | T/I | 1 | 0 | 0 | 0 | 1 | ||
rs10462021 | A/G | H/R | 0.928 | 0.07 | 0.002 | 0.037 | 0.731 | ||
rs35072750 | A/G | T/A | 1 | 0 | 0 | 0 | 1 | C__25963142_20 | |
TIM | rs774027 | T/A | L/I | 0.359 | 0.453 | 0.188 | 0.415 | 0.048 | C___8340562_10 |
rs774047 | A/G | Q/R | 0.354 | 0.456 | 0.19 | 0.418 | 0.064 | C___3134218_10 | |
rs2291739 | C/T | P/L | 0.316 | 0.474 | 0.211 | 0.448 | 0.215 | C__15966257_10 |
