Table 1 Characteristics of studies included in this meta-analysis
First author | Year | Cancer type | Race | Source of control | Case | Control | Method | MAF | HWE |
|---|---|---|---|---|---|---|---|---|---|
Healey | 2000 | breast | Caucasian | PB | 234 | 266 | TaqMan | / | / |
Healey | 2000 | breast | Caucasian | PB | 449 | 453 | TaqMan | / | / |
Healey | 2000 | breast | Caucasian | PB | 659 | 866 | TaqMan | / | / |
Spurdle | 2002 | breast | Caucasian | PB | 1397 | 775 | Taqman | 0.26 | 0.49 |
Ishitobi | 2003 | breast | Asian | HB | 149 | 154 | PCR-SSCP | 0.20 | 0.10 |
Menzel | 2004 | breast | Caucasian | PB | 94 | 152 | Pyrosequencingt | 0.26 | 0.76 |
Menzel | 2004 | breast | Caucasian | PB | 211 | 912 | Pyrosequencingt | 0.27 | 0.90 |
Freedman | 2004 | breast | Mixed | PB | 1715 | 2602 | Unknown | / | / |
Cox | 2005 | breast | Caucasian | Nested | 1285 | 1660 | Taqman | 0.27 | 0.48 |
Millikan | 2005 | breast | African | PB | 849 | 675 | Taqman | 0.13 | 0.89 |
Millikan | 2005 | breast | Caucasian | PB | 1265 | 1135 | Taqman | 0.28 | 0.70 |
Jenkins | 2005 | breast | Caucasian | Family | 1400 | 800 | Unknown | / | / |
HBBCS | 2006 | breast | Caucasian | HB | 274 | 273 | Restriction enzyme-based assays | 0.32 | 0.27 |
HBCS | 2006 | breast | Caucasian | HB | 807 | 697 | Taqman | 0.22 | 0.40 |
Sheffield | 2006 | breast | Caucasian | HB | 973 | 956 | Taqman | 0.30 | 0.57 |
LSHTM | 2006 | breast | Caucasian | Nested | 585 | 598 | Restriction enzyme-based assays | 0.29 | 0.28 |
Madrid | 2006 | breast | Caucasian | HB | 712 | 767 | Taqman and Illumina | 0.30 | 0.39 |
USRTS | 2006 | breast | Caucasian | Nested | 707 | 1046 | Taqman | 0.30 | 0.34 |
SEARCH | 2006 | breast | Caucasian | PB | 4454 | 4537 | Taqman | 0.28 | 0.07 |
KBCP | 2006 | breast | Caucasian | HB | 446 | 452 | Taqman | 0.22 | 0.61 |
GESBC | 2006 | breast | Caucasian | PB | 602 | 851 | Various | 0.29 | 0.12 |
Garcia-Closas | 2006 | breast | Caucasian | PB | 3161 | 2701 | Taqman | 0.28 | 0.09 |
Garcia-Closas | 2006 | breast | Caucasian | PB | 1968 | 2276 | Taqman | 0.26 | 0.18 |
Johnson | 2007 | breast | Caucasian | NA | 473 | 2461 | Illumina Sentrix Bead Arrays | 0.28 | 0.88 |
Seymour | 2008 | breast | Caucasian | HB | 263 | 60 | PCR | 0.23 | 0.13 |
Hu R | 2008 | breast | Asian | NA | 71 | 85 | PCR | 0.22 | 0.16 |
Dombernowsky | 2009 | breast | Caucasian | PB | 1200 | 4119 | TaqMan | 0.28 | 0.49 |
Sun | 2009 | breast | Asian | PB | 512 | 541 | PCR | / | / |
Li | 2011 | breast | Asian | HB | 152 | 165 | PCR | 0.26 | 0.56 |
Silva | 2011 | breast | Mixed | NA | 54 | 20 | PCR | / | / |
Auranen | 2003 | Ovarian | Caucasian | PB | 680 | 1546 | TaqMan | 0.27 | 0.12 |
Wenham | 2003 | Ovarian | Caucasian | PB | 312 | 398 | Taqman | 0.25 | 0.81 |
Beesley | 2007 | Ovarian | Caucasian | PB | 492 | 948 | MALDI-TOF mass spectrophotometric | 0.27 | 0.38 |
Beesley | 2007 | Ovarian | Caucasian | PB | 930 | 825 | MALDI-TOF mass spectrophotometric | 0.26 | 0.04 |
Hill | 2006 | NHL | Mixed | PB | 1116 | 926 | Illumina | 0.26 | 0.67 |
Shen | 2006 | NHL | Mixed | PB | 476 | 555 | Taqman | 0.26 | 0.46 |
Scott | 2007 | NHL | Caucasian | PB | 676 | 757 | TaqMan | 0.29 | 0.85 |
Shen | 2007 | NHL | Caucasian | PB | 556 | 498 | TaqMan | 0.30 | 0.46 |
Salagovic | 2012 | NHL | Caucasian | HB | 107 | 127 | PCR | 0.20 | 0.97 |
Rudd | 2006 | CLL | Caucasian | HB | 962 | 2695 | Illumina | / | / |
Hu | 2003 | ESCC | Asian | PB | 120 | 231 | PCR–SSCP | 0.25 | 0.13 |
Wu | 2006 | bladder | Caucasian | PB | 604 | 595 | Taqman | 0.25 | 0.76 |
Debniak | 2008 | melanoma | Caucasian | PB + HB | 627 | 3819 | RTPCR | / | / |
Agalliu | 2010 | prostate | Caucasian | PB | 1269 | 1243 | SNPlex™ | 0.27 | 0.62 |
Agalliu | 2010 | prostate | African | PB | 142 | 79 | SNPlex™ | 0.14 | 0.66 |
Kotnis | 2012 | overall | Asian | HB | 109 | 186 | PCR | 0.38 | 0.01 |