Figure 2
From: Further Improvements to Linear Mixed Models for Genome-Wide Association Studies
Box plots showing number of SNPs selected and mixing weight as a function of the number of causal SNPs with purely synthetic data.
The first column shows log10 of the number of SNPs selected by LMM(select). The highest point corresponds to the selection of all SNPs. The second and third columns show the number of selected SNPs and mixing weights for LMM(all + select). A mixing weight of 1 corresponds to using a GSM based only on SNP selection. A mixing weight of 0 corresponds to using a GSM based only on all SNPs.
